Experiment: NophageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00490 and ECD_00492 are separated by 86 nucleotides ECD_00492 and ECD_00493 are separated by 67 nucleotides ECD_00493 and ECD_00494 are separated by 254 nucleotides ECD_00494 and ECD_00495 are separated by 464 nucleotides
ECD_00490: ECD_00490 - putative DNA N-6-adenine-methyltransferase of bacteriophage, at 536,205 to 536,570
_00490
ECD_00492: ECD_00492 - hypothetical protein, at 536,657 to 536,842
_00492
ECD_00493: ECD_00493 - DLP12 prophage; multidrug resistance protein, at 536,910 to 537,242
_00493
ECD_00494: ECD_00494 - DLP12 prophage; putative recombinase, at 537,497 to 539,023
_00494
ECD_00495: ECD_00495 - inactive polymorphonuclear leukocyte migration suppressor; DLP12 prophage; UPF0098 family secreted protein, at 539,488 to 540,039
_00495
Position (kb) 537
538
539
540 Strain fitness (log2 ratio) -1
0
1 at 536.522 kb on + strand, within ECD_00490 at 536.530 kb on + strand, within ECD_00490 at 536.564 kb on - strand at 536.637 kb on + strand at 536.638 kb on - strand at 536.815 kb on + strand, within ECD_00492 at 538.035 kb on + strand, within ECD_00494 at 538.147 kb on - strand, within ECD_00494 at 539.637 kb on + strand, within ECD_00495 at 539.637 kb on + strand, within ECD_00495 at 539.699 kb on + strand, within ECD_00495 at 539.773 kb on + strand, within ECD_00495 at 539.889 kb on + strand, within ECD_00495
Per-strain Table
Position Strand Gene LocusTag Fraction NophageControl remove 536,522 + ECD_00490 0.87 +0.2 536,530 + ECD_00490 0.89 +1.2 536,564 - +0.1 536,637 + -0.6 536,638 - -0.0 536,815 + ECD_00492 0.85 +0.4 538,035 + ECD_00494 0.35 -0.6 538,147 - ECD_00494 0.43 -0.6 539,637 + ECD_00495 0.27 -0.2 539,637 + ECD_00495 0.27 +0.4 539,699 + ECD_00495 0.38 -0.2 539,773 + ECD_00495 0.52 +0.5 539,889 + ECD_00495 0.73 -1.6
Or see this region's nucleotide sequence