Experiment: NophageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00303 and ECD_00304 are separated by 9 nucleotides ECD_00304 and ECD_00305 overlap by 4 nucleotides ECD_00305 and ECD_00306 overlap by 4 nucleotides
ECD_00303: ECD_00303 - 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase, at 340,774 to 341,640
_00303
ECD_00304: ECD_00304 - 2-keto-4-pentenoate hydratase, at 341,650 to 342,459
_00304
ECD_00305: ECD_00305 - acetaldehyde-CoA dehydrogenase II, NAD-binding, at 342,456 to 343,406
_00305
ECD_00306: ECD_00306 - 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase, class I, at 343,403 to 344,416
_00306
Position (kb) 342
343
344 Strain fitness (log2 ratio) -1
0
1
2 at 341.554 kb on - strand at 341.661 kb on + strand at 341.661 kb on + strand at 341.661 kb on + strand at 341.661 kb on + strand at 341.662 kb on - strand at 341.780 kb on + strand, within ECD_00304 at 341.780 kb on + strand, within ECD_00304 at 341.781 kb on - strand, within ECD_00304 at 341.781 kb on - strand, within ECD_00304 at 341.781 kb on - strand, within ECD_00304 at 341.791 kb on + strand, within ECD_00304 at 341.827 kb on - strand, within ECD_00304 at 341.894 kb on + strand, within ECD_00304 at 341.895 kb on - strand, within ECD_00304 at 342.028 kb on + strand, within ECD_00304 at 342.029 kb on - strand, within ECD_00304 at 342.048 kb on - strand, within ECD_00304 at 342.139 kb on + strand, within ECD_00304 at 342.139 kb on + strand, within ECD_00304 at 342.140 kb on - strand, within ECD_00304 at 342.140 kb on - strand, within ECD_00304 at 342.140 kb on - strand, within ECD_00304 at 342.211 kb on - strand, within ECD_00304 at 342.264 kb on + strand, within ECD_00304 at 342.328 kb on - strand, within ECD_00304 at 342.347 kb on + strand, within ECD_00304 at 342.404 kb on + strand at 342.404 kb on + strand at 342.404 kb on + strand at 342.404 kb on + strand at 342.405 kb on - strand at 342.603 kb on - strand, within ECD_00305 at 342.676 kb on + strand, within ECD_00305 at 342.676 kb on + strand, within ECD_00305 at 342.676 kb on + strand, within ECD_00305 at 342.926 kb on + strand, within ECD_00305 at 342.935 kb on + strand, within ECD_00305 at 343.086 kb on + strand, within ECD_00305 at 343.086 kb on + strand, within ECD_00305 at 343.086 kb on + strand, within ECD_00305 at 343.087 kb on - strand, within ECD_00305 at 343.087 kb on - strand, within ECD_00305 at 343.087 kb on - strand, within ECD_00305 at 343.090 kb on + strand, within ECD_00305 at 343.090 kb on + strand, within ECD_00305 at 343.091 kb on - strand, within ECD_00305 at 343.091 kb on - strand, within ECD_00305 at 343.161 kb on + strand, within ECD_00305 at 343.162 kb on - strand, within ECD_00305 at 343.162 kb on - strand, within ECD_00305 at 343.162 kb on - strand, within ECD_00305 at 343.162 kb on - strand, within ECD_00305 at 343.166 kb on - strand, within ECD_00305 at 343.311 kb on + strand, within ECD_00305 at 343.331 kb on + strand at 343.421 kb on + strand at 343.573 kb on + strand, within ECD_00306 at 343.574 kb on - strand, within ECD_00306 at 343.577 kb on + strand, within ECD_00306 at 343.578 kb on - strand, within ECD_00306 at 343.769 kb on - strand, within ECD_00306 at 343.826 kb on - strand, within ECD_00306 at 343.888 kb on + strand, within ECD_00306 at 343.888 kb on + strand, within ECD_00306 at 343.892 kb on + strand, within ECD_00306 at 343.892 kb on + strand, within ECD_00306 at 343.892 kb on + strand, within ECD_00306 at 344.165 kb on + strand, within ECD_00306 at 344.327 kb on - strand at 344.374 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NophageControl remove 341,554 - +0.1 341,661 + +0.2 341,661 + +1.8 341,661 + -0.6 341,661 + -0.1 341,662 - -0.3 341,780 + ECD_00304 0.16 -0.2 341,780 + ECD_00304 0.16 -0.1 341,781 - ECD_00304 0.16 -0.1 341,781 - ECD_00304 0.16 -0.9 341,781 - ECD_00304 0.16 -0.5 341,791 + ECD_00304 0.17 -0.9 341,827 - ECD_00304 0.22 +0.3 341,894 + ECD_00304 0.30 -0.3 341,895 - ECD_00304 0.30 -0.1 342,028 + ECD_00304 0.47 -0.4 342,029 - ECD_00304 0.47 +1.6 342,048 - ECD_00304 0.49 +0.1 342,139 + ECD_00304 0.60 +0.3 342,139 + ECD_00304 0.60 -0.2 342,140 - ECD_00304 0.60 -1.7 342,140 - ECD_00304 0.60 -0.4 342,140 - ECD_00304 0.60 -0.1 342,211 - ECD_00304 0.69 -0.4 342,264 + ECD_00304 0.76 -0.8 342,328 - ECD_00304 0.84 +1.2 342,347 + ECD_00304 0.86 -0.7 342,404 + -0.5 342,404 + -0.3 342,404 + +0.9 342,404 + +0.5 342,405 - +0.9 342,603 - ECD_00305 0.15 +0.3 342,676 + ECD_00305 0.23 +0.5 342,676 + ECD_00305 0.23 -0.9 342,676 + ECD_00305 0.23 +0.5 342,926 + ECD_00305 0.49 -0.6 342,935 + ECD_00305 0.50 +0.2 343,086 + ECD_00305 0.66 -0.4 343,086 + ECD_00305 0.66 +0.3 343,086 + ECD_00305 0.66 -0.4 343,087 - ECD_00305 0.66 +1.4 343,087 - ECD_00305 0.66 -0.2 343,087 - ECD_00305 0.66 -0.0 343,090 + ECD_00305 0.67 +0.4 343,090 + ECD_00305 0.67 +1.0 343,091 - ECD_00305 0.67 +0.2 343,091 - ECD_00305 0.67 -0.3 343,161 + ECD_00305 0.74 -0.5 343,162 - ECD_00305 0.74 +0.5 343,162 - ECD_00305 0.74 -0.6 343,162 - ECD_00305 0.74 +0.3 343,162 - ECD_00305 0.74 -0.3 343,166 - ECD_00305 0.75 -0.4 343,311 + ECD_00305 0.90 -0.3 343,331 + -0.7 343,421 + +1.0 343,573 + ECD_00306 0.17 -0.4 343,574 - ECD_00306 0.17 -0.6 343,577 + ECD_00306 0.17 +1.3 343,578 - ECD_00306 0.17 +0.4 343,769 - ECD_00306 0.36 +0.0 343,826 - ECD_00306 0.42 +0.8 343,888 + ECD_00306 0.48 +0.2 343,888 + ECD_00306 0.48 +0.2 343,892 + ECD_00306 0.48 +0.6 343,892 + ECD_00306 0.48 -0.2 343,892 + ECD_00306 0.48 +0.3 344,165 + ECD_00306 0.75 -0.1 344,327 - +0.3 344,374 + +2.0
Or see this region's nucleotide sequence