Experiment: NophageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00250 and ECD_00251 are separated by 25 nucleotides ECD_00251 and ECD_00252 are separated by 57 nucleotides ECD_00252 and ECD_00253 are separated by 25 nucleotides
ECD_00250: ECD_00250 - ECP production outer membrane protein, at 276,992 to 279,517
_00250
ECD_00251: ECD_00251 - ECP production pilus chaperone, at 279,543 to 280,211
_00251
ECD_00252: ECD_00252 - ECP pilin, at 280,269 to 280,904
_00252
ECD_00253: ECD_00253 - putative transcriptional regulator for the ecp operon, at 280,930 to 281,520
_00253
Position (kb) 279
280
281 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 278.545 kb on - strand, within ECD_00250 at 278.550 kb on - strand, within ECD_00250 at 278.628 kb on - strand, within ECD_00250 at 278.628 kb on - strand, within ECD_00250 at 278.628 kb on - strand, within ECD_00250 at 278.628 kb on - strand, within ECD_00250 at 278.826 kb on + strand, within ECD_00250 at 278.827 kb on - strand, within ECD_00250 at 278.827 kb on - strand, within ECD_00250 at 278.827 kb on - strand, within ECD_00250 at 278.837 kb on - strand, within ECD_00250 at 278.839 kb on - strand, within ECD_00250 at 278.839 kb on - strand, within ECD_00250 at 278.840 kb on + strand, within ECD_00250 at 278.937 kb on + strand, within ECD_00250 at 278.937 kb on + strand, within ECD_00250 at 278.951 kb on - strand, within ECD_00250 at 278.978 kb on - strand, within ECD_00250 at 278.979 kb on + strand, within ECD_00250 at 278.980 kb on - strand, within ECD_00250 at 279.004 kb on + strand, within ECD_00250 at 279.059 kb on + strand, within ECD_00250 at 279.059 kb on + strand, within ECD_00250 at 279.261 kb on - strand, within ECD_00250 at 279.341 kb on - strand at 279.341 kb on - strand at 279.342 kb on + strand at 279.343 kb on - strand at 279.395 kb on - strand at 279.423 kb on - strand at 279.423 kb on - strand at 279.540 kb on + strand at 279.540 kb on + strand at 279.540 kb on + strand at 279.544 kb on + strand at 279.545 kb on - strand at 279.545 kb on - strand at 279.564 kb on - strand at 279.649 kb on + strand, within ECD_00251 at 279.650 kb on - strand, within ECD_00251 at 279.669 kb on - strand, within ECD_00251 at 279.922 kb on + strand, within ECD_00251 at 279.981 kb on + strand, within ECD_00251 at 280.124 kb on + strand, within ECD_00251 at 280.134 kb on + strand, within ECD_00251 at 280.135 kb on - strand, within ECD_00251 at 280.135 kb on - strand, within ECD_00251 at 280.135 kb on - strand, within ECD_00251 at 280.137 kb on - strand, within ECD_00251 at 280.137 kb on - strand, within ECD_00251 at 280.137 kb on - strand, within ECD_00251 at 280.257 kb on - strand at 280.270 kb on + strand at 280.270 kb on + strand at 280.339 kb on + strand, within ECD_00252 at 280.358 kb on + strand, within ECD_00252 at 280.449 kb on - strand, within ECD_00252 at 280.782 kb on + strand, within ECD_00252 at 280.783 kb on - strand, within ECD_00252 at 280.945 kb on - strand at 281.191 kb on - strand, within ECD_00253
Per-strain Table
Position Strand Gene LocusTag Fraction NophageControl remove 278,545 - ECD_00250 0.61 +0.5 278,550 - ECD_00250 0.62 +0.2 278,628 - ECD_00250 0.65 -0.9 278,628 - ECD_00250 0.65 -1.0 278,628 - ECD_00250 0.65 +1.2 278,628 - ECD_00250 0.65 -1.1 278,826 + ECD_00250 0.73 +0.2 278,827 - ECD_00250 0.73 +0.1 278,827 - ECD_00250 0.73 +0.8 278,827 - ECD_00250 0.73 +1.4 278,837 - ECD_00250 0.73 +0.9 278,839 - ECD_00250 0.73 -0.3 278,839 - ECD_00250 0.73 +0.6 278,840 + ECD_00250 0.73 +0.4 278,937 + ECD_00250 0.77 +0.5 278,937 + ECD_00250 0.77 -0.3 278,951 - ECD_00250 0.78 +0.3 278,978 - ECD_00250 0.79 +0.1 278,979 + ECD_00250 0.79 -0.1 278,980 - ECD_00250 0.79 -0.6 279,004 + ECD_00250 0.80 +0.5 279,059 + ECD_00250 0.82 +0.3 279,059 + ECD_00250 0.82 -0.3 279,261 - ECD_00250 0.90 +0.7 279,341 - +0.8 279,341 - -0.9 279,342 + +0.3 279,343 - -0.1 279,395 - -0.5 279,423 - -0.6 279,423 - +0.6 279,540 + +0.8 279,540 + -0.5 279,540 + +0.2 279,544 + +0.3 279,545 - -0.1 279,545 - -0.3 279,564 - -0.1 279,649 + ECD_00251 0.16 -0.1 279,650 - ECD_00251 0.16 -0.6 279,669 - ECD_00251 0.19 -0.2 279,922 + ECD_00251 0.57 -0.3 279,981 + ECD_00251 0.65 -1.5 280,124 + ECD_00251 0.87 +0.6 280,134 + ECD_00251 0.88 -0.5 280,135 - ECD_00251 0.88 -1.0 280,135 - ECD_00251 0.88 -1.6 280,135 - ECD_00251 0.88 -1.8 280,137 - ECD_00251 0.89 -0.7 280,137 - ECD_00251 0.89 -1.3 280,137 - ECD_00251 0.89 -1.2 280,257 - +3.1 280,270 + +0.2 280,270 + +0.5 280,339 + ECD_00252 0.11 -0.3 280,358 + ECD_00252 0.14 -0.7 280,449 - ECD_00252 0.28 -0.7 280,782 + ECD_00252 0.81 -1.7 280,783 - ECD_00252 0.81 +0.9 280,945 - +0.3 281,191 - ECD_00253 0.44 +0.1
Or see this region's nucleotide sequence