Experiment: NophageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00192 and ECD_00193 are separated by 52 nucleotides ECD_00193 and ECD_00194 are separated by 110 nucleotides ECD_00194 and ECD_00195 overlap by 4 nucleotides
ECD_00192: ECD_00192 - putative lipoprotein, at 219,022 to 219,846
_00192
ECD_00193: ECD_00193 - prolyl-tRNA synthetase, at 219,899 to 221,617
_00193
ECD_00194: ECD_00194 - tRNA-Thr(GGU) m(6)t(6)A37 methyltransferase, SAM-dependent, at 221,728 to 222,435
_00194
ECD_00195: ECD_00195 - putative outer membrane protein, at 222,432 to 222,836
_00195
Position (kb) 219
220
221
222 Strain fitness (log2 ratio) -1
0
1 at 218.969 kb on + strand at 218.970 kb on - strand at 218.978 kb on + strand at 218.978 kb on + strand at 218.993 kb on - strand at 219.015 kb on + strand at 219.016 kb on - strand at 219.059 kb on + strand at 219.059 kb on + strand at 219.060 kb on - strand at 219.086 kb on + strand at 219.087 kb on - strand at 219.135 kb on + strand, within ECD_00192 at 219.135 kb on + strand, within ECD_00192 at 219.136 kb on - strand, within ECD_00192 at 219.180 kb on + strand, within ECD_00192 at 219.381 kb on - strand, within ECD_00192 at 219.384 kb on + strand, within ECD_00192 at 219.394 kb on - strand, within ECD_00192 at 219.480 kb on + strand, within ECD_00192 at 219.743 kb on - strand, within ECD_00192 at 219.774 kb on + strand at 219.778 kb on + strand at 219.778 kb on + strand at 221.982 kb on - strand, within ECD_00194 at 222.023 kb on + strand, within ECD_00194 at 222.023 kb on + strand, within ECD_00194 at 222.024 kb on - strand, within ECD_00194 at 222.132 kb on + strand, within ECD_00194 at 222.133 kb on - strand, within ECD_00194 at 222.133 kb on - strand, within ECD_00194 at 222.311 kb on + strand, within ECD_00194 at 222.409 kb on + strand at 222.464 kb on + strand at 222.468 kb on + strand at 222.469 kb on - strand at 222.469 kb on - strand at 222.469 kb on - strand at 222.469 kb on - strand at 222.515 kb on + strand, within ECD_00195 at 222.569 kb on + strand, within ECD_00195
Per-strain Table
Position Strand Gene LocusTag Fraction NophageControl remove 218,969 + -1.0 218,970 - +0.8 218,978 + +0.4 218,978 + +1.1 218,993 - +0.1 219,015 + +0.6 219,016 - -0.5 219,059 + +0.3 219,059 + +0.2 219,060 - -0.2 219,086 + -0.6 219,087 - +0.0 219,135 + ECD_00192 0.14 -1.6 219,135 + ECD_00192 0.14 +0.1 219,136 - ECD_00192 0.14 +0.2 219,180 + ECD_00192 0.19 -0.0 219,381 - ECD_00192 0.44 -0.5 219,384 + ECD_00192 0.44 -0.6 219,394 - ECD_00192 0.45 -0.6 219,480 + ECD_00192 0.56 -1.1 219,743 - ECD_00192 0.87 +0.1 219,774 + -1.2 219,778 + -0.3 219,778 + +0.6 221,982 - ECD_00194 0.36 +0.9 222,023 + ECD_00194 0.42 +0.4 222,023 + ECD_00194 0.42 +0.0 222,024 - ECD_00194 0.42 +0.5 222,132 + ECD_00194 0.57 +0.3 222,133 - ECD_00194 0.57 +1.2 222,133 - ECD_00194 0.57 +0.1 222,311 + ECD_00194 0.82 +1.6 222,409 + +0.4 222,464 + -0.5 222,468 + +0.4 222,469 - -0.0 222,469 - +0.3 222,469 - +0.6 222,469 - -0.3 222,515 + ECD_00195 0.20 +0.4 222,569 + ECD_00195 0.34 -0.5
Or see this region's nucleotide sequence