Experiment: NophageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00124 and ECD_00125 are separated by 40 nucleotides ECD_00125 and ECD_00126 are separated by 108 nucleotides ECD_00126 and ECD_00127 overlap by 4 nucleotides ECD_00127 and ECD_00128 are separated by 104 nucleotides
ECD_00124: ECD_00124 - hypoxanthine phosphoribosyltransferase, at 144,235 to 144,771
_00124
ECD_00125: ECD_00125 - carbonic anhydrase, at 144,812 to 145,474
_00125
ECD_00126: ECD_00126 - putative ABC transporter ATPase, at 145,583 to 146,509
_00126
ECD_00127: ECD_00127 - putative ABC transporter permease, at 146,506 to 147,276
_00127
ECD_00128: ECD_00128 - putative PTS Enzyme IIA, at 147,381 to 147,821
_00128
Position (kb) 145
146
147 Strain fitness (log2 ratio) -1
0
1 at 144.713 kb on - strand, within ECD_00124 at 144.739 kb on + strand at 144.769 kb on + strand at 144.770 kb on - strand at 145.557 kb on + strand at 145.557 kb on + strand at 145.558 kb on - strand at 145.566 kb on - strand at 145.570 kb on + strand at 145.571 kb on - strand at 145.571 kb on - strand at 145.653 kb on + strand at 145.653 kb on + strand at 145.732 kb on + strand, within ECD_00126 at 145.747 kb on - strand, within ECD_00126 at 145.750 kb on + strand, within ECD_00126 at 145.773 kb on + strand, within ECD_00126 at 145.773 kb on + strand, within ECD_00126 at 145.895 kb on + strand, within ECD_00126 at 145.895 kb on + strand, within ECD_00126 at 145.992 kb on + strand, within ECD_00126 at 145.993 kb on - strand, within ECD_00126 at 146.047 kb on + strand, within ECD_00126 at 146.278 kb on + strand, within ECD_00126 at 146.395 kb on - strand, within ECD_00126 at 146.398 kb on + strand, within ECD_00126 at 146.407 kb on - strand, within ECD_00126 at 146.427 kb on + strand at 146.430 kb on + strand at 146.430 kb on + strand at 146.431 kb on - strand at 146.434 kb on + strand at 146.571 kb on + strand at 146.625 kb on + strand, within ECD_00127 at 146.652 kb on + strand, within ECD_00127 at 146.677 kb on + strand, within ECD_00127 at 146.677 kb on + strand, within ECD_00127 at 146.678 kb on - strand, within ECD_00127 at 146.678 kb on - strand, within ECD_00127 at 146.679 kb on + strand, within ECD_00127 at 146.732 kb on - strand, within ECD_00127 at 146.775 kb on + strand, within ECD_00127 at 146.776 kb on - strand, within ECD_00127 at 146.776 kb on - strand, within ECD_00127 at 146.779 kb on - strand, within ECD_00127 at 147.053 kb on - strand, within ECD_00127 at 147.131 kb on - strand, within ECD_00127 at 147.133 kb on - strand, within ECD_00127 at 147.133 kb on - strand, within ECD_00127 at 147.133 kb on - strand, within ECD_00127 at 147.213 kb on + strand at 147.274 kb on + strand at 147.274 kb on + strand at 147.275 kb on - strand at 147.280 kb on + strand at 147.351 kb on + strand at 147.351 kb on + strand at 147.352 kb on - strand at 147.398 kb on + strand at 147.399 kb on - strand at 147.399 kb on - strand at 147.503 kb on + strand, within ECD_00128 at 147.504 kb on - strand, within ECD_00128 at 147.506 kb on + strand, within ECD_00128 at 147.506 kb on + strand, within ECD_00128 at 147.507 kb on - strand, within ECD_00128
Per-strain Table
Position Strand Gene LocusTag Fraction NophageControl remove 144,713 - ECD_00124 0.89 +0.4 144,739 + -0.2 144,769 + -0.7 144,770 - -0.7 145,557 + -0.5 145,557 + +0.8 145,558 - +0.4 145,566 - +0.4 145,570 + +0.8 145,571 - -0.5 145,571 - +0.6 145,653 + -0.5 145,653 + -0.5 145,732 + ECD_00126 0.16 -0.4 145,747 - ECD_00126 0.18 -0.2 145,750 + ECD_00126 0.18 +0.9 145,773 + ECD_00126 0.20 +0.4 145,773 + ECD_00126 0.20 -0.0 145,895 + ECD_00126 0.34 -0.2 145,895 + ECD_00126 0.34 +0.8 145,992 + ECD_00126 0.44 +1.5 145,993 - ECD_00126 0.44 +1.3 146,047 + ECD_00126 0.50 +0.4 146,278 + ECD_00126 0.75 -0.4 146,395 - ECD_00126 0.88 +0.2 146,398 + ECD_00126 0.88 -0.2 146,407 - ECD_00126 0.89 +1.4 146,427 + +0.6 146,430 + +0.1 146,430 + +0.5 146,431 - +0.3 146,434 + -0.3 146,571 + -0.2 146,625 + ECD_00127 0.15 -0.1 146,652 + ECD_00127 0.19 -0.2 146,677 + ECD_00127 0.22 -0.3 146,677 + ECD_00127 0.22 -0.1 146,678 - ECD_00127 0.22 +0.4 146,678 - ECD_00127 0.22 -0.3 146,679 + ECD_00127 0.22 +0.2 146,732 - ECD_00127 0.29 +0.6 146,775 + ECD_00127 0.35 -0.1 146,776 - ECD_00127 0.35 +0.6 146,776 - ECD_00127 0.35 +1.3 146,779 - ECD_00127 0.35 -0.9 147,053 - ECD_00127 0.71 -0.3 147,131 - ECD_00127 0.81 -0.6 147,133 - ECD_00127 0.81 -1.4 147,133 - ECD_00127 0.81 +0.1 147,133 - ECD_00127 0.81 -0.3 147,213 + -1.3 147,274 + -0.2 147,274 + +0.4 147,275 - +0.1 147,280 + -0.9 147,351 + +0.5 147,351 + +0.1 147,352 - -0.7 147,398 + -0.7 147,399 - +0.0 147,399 - -0.4 147,503 + ECD_00128 0.28 +1.6 147,504 - ECD_00128 0.28 +0.3 147,506 + ECD_00128 0.28 +0.2 147,506 + ECD_00128 0.28 +0.6 147,507 - ECD_00128 0.29 +0.1
Or see this region's nucleotide sequence