Experiment: NophageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00012 and ECD_00013 are separated by 66 nucleotides ECD_00013 and ECD_00014 are separated by 376 nucleotides ECD_00014 and ECD_00015 are separated by 88 nucleotides
ECD_00011: ECD_00011 - UPF0174 family protein, at 10,641 to 11,354
_00011
ECD_00012: ECD_00012 - hypothetical protein, at 10,828 to 11,313
_00012
ECD_00013: ECD_00013 - UPF0412 family protein, at 11,380 to 11,784
_00013
ECD_00014: ECD_00014 - chaperone Hsp70, with co-chaperone DnaJ, at 12,161 to 14,077
_00014
ECD_00015: ECD_00015 - chaperone Hsp40, DnaK co-chaperone, at 14,166 to 15,296
_00015
Position (kb) 12
13
14
15 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 11.224 kb on - strand at 11.304 kb on - strand at 11.342 kb on - strand at 11.369 kb on - strand at 11.369 kb on - strand at 11.431 kb on - strand, within ECD_00013 at 11.532 kb on + strand, within ECD_00013 at 11.533 kb on - strand, within ECD_00013 at 11.587 kb on + strand, within ECD_00013 at 11.593 kb on + strand, within ECD_00013 at 11.620 kb on + strand, within ECD_00013 at 11.620 kb on + strand, within ECD_00013 at 11.707 kb on - strand, within ECD_00013 at 11.707 kb on - strand, within ECD_00013 at 11.707 kb on - strand, within ECD_00013 at 11.880 kb on + strand at 12.038 kb on + strand at 12.038 kb on + strand at 12.039 kb on - strand at 12.039 kb on - strand at 12.042 kb on - strand at 12.109 kb on + strand at 12.112 kb on + strand at 12.112 kb on + strand at 12.112 kb on + strand at 12.143 kb on + strand at 12.143 kb on + strand at 12.143 kb on + strand at 12.143 kb on + strand at 12.145 kb on + strand at 12.145 kb on + strand at 12.145 kb on + strand at 12.145 kb on + strand at 12.145 kb on + strand at 12.405 kb on + strand, within ECD_00014 at 12.598 kb on + strand, within ECD_00014 at 12.724 kb on + strand, within ECD_00014 at 13.003 kb on + strand, within ECD_00014 at 13.246 kb on + strand, within ECD_00014 at 13.272 kb on + strand, within ECD_00014 at 13.326 kb on + strand, within ECD_00014 at 13.326 kb on + strand, within ECD_00014 at 13.758 kb on + strand, within ECD_00014 at 14.084 kb on + strand at 14.084 kb on + strand at 14.086 kb on + strand at 14.086 kb on + strand at 14.098 kb on + strand at 14.098 kb on + strand at 14.098 kb on + strand at 14.098 kb on + strand at 14.098 kb on + strand at 14.100 kb on + strand at 14.100 kb on + strand at 14.171 kb on + strand at 14.184 kb on + strand at 14.259 kb on + strand at 14.306 kb on + strand, within ECD_00015 at 14.325 kb on + strand, within ECD_00015 at 14.325 kb on + strand, within ECD_00015 at 14.325 kb on + strand, within ECD_00015 at 14.361 kb on + strand, within ECD_00015 at 14.362 kb on - strand, within ECD_00015 at 14.370 kb on + strand, within ECD_00015 at 14.399 kb on + strand, within ECD_00015 at 14.520 kb on + strand, within ECD_00015 at 14.956 kb on - strand, within ECD_00015
Per-strain Table
Position Strand Gene LocusTag Fraction NophageControl remove 11,224 - +0.0 11,304 - +0.7 11,342 - -0.3 11,369 - +0.2 11,369 - -0.4 11,431 - ECD_00013 0.13 +1.0 11,532 + ECD_00013 0.38 +0.1 11,533 - ECD_00013 0.38 +0.4 11,587 + ECD_00013 0.51 -0.1 11,593 + ECD_00013 0.53 -0.5 11,620 + ECD_00013 0.59 -0.6 11,620 + ECD_00013 0.59 -0.7 11,707 - ECD_00013 0.81 -0.9 11,707 - ECD_00013 0.81 +0.5 11,707 - ECD_00013 0.81 -0.1 11,880 + -1.3 12,038 + -0.4 12,038 + +0.4 12,039 - -0.8 12,039 - -0.6 12,042 - -0.2 12,109 + +0.5 12,112 + +0.4 12,112 + +0.2 12,112 + +0.7 12,143 + -0.9 12,143 + +0.6 12,143 + -1.7 12,143 + -1.6 12,145 + -2.6 12,145 + -0.9 12,145 + -2.9 12,145 + -0.6 12,145 + -1.5 12,405 + ECD_00014 0.13 -3.6 12,598 + ECD_00014 0.23 -2.4 12,724 + ECD_00014 0.29 -1.4 13,003 + ECD_00014 0.44 -3.1 13,246 + ECD_00014 0.57 -2.4 13,272 + ECD_00014 0.58 -0.7 13,326 + ECD_00014 0.61 +0.6 13,326 + ECD_00014 0.61 -1.2 13,758 + ECD_00014 0.83 -0.3 14,084 + +0.3 14,084 + +0.0 14,086 + +0.5 14,086 + +0.3 14,098 + +0.3 14,098 + +0.3 14,098 + -0.4 14,098 + -0.2 14,098 + -0.1 14,100 + +0.1 14,100 + +0.2 14,171 + -0.4 14,184 + -1.1 14,259 + -0.8 14,306 + ECD_00015 0.12 -0.7 14,325 + ECD_00015 0.14 -0.9 14,325 + ECD_00015 0.14 -0.0 14,325 + ECD_00015 0.14 -0.5 14,361 + ECD_00015 0.17 -1.7 14,362 - ECD_00015 0.17 -1.4 14,370 + ECD_00015 0.18 -0.1 14,399 + ECD_00015 0.21 -1.4 14,520 + ECD_00015 0.31 +0.0 14,956 - ECD_00015 0.70 +0.0
Or see this region's nucleotide sequence