Experiment: L-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu6110 and Atu6111 overlap by 1 nucleotides Atu6111 and Atu6112 are separated by 361 nucleotides
Atu6110: Atu6110 - antirestriction protein, at 131,360 to 132,286
Atu6110
Atu6111: Atu6111 - conserved hypothetical protein, at 132,286 to 133,200
Atu6111
Atu6112: Atu6112 - conserved hypothetical protein, at 133,562 to 134,212
Atu6112
Position (kb) 132
133
134 Strain fitness (log2 ratio) -1
0
1
2
3 at 131.319 kb on + strand at 131.337 kb on - strand at 131.445 kb on + strand at 131.453 kb on - strand, within Atu6110 at 131.477 kb on + strand, within Atu6110 at 131.477 kb on + strand, within Atu6110 at 131.477 kb on + strand, within Atu6110 at 131.518 kb on + strand, within Atu6110 at 131.518 kb on + strand, within Atu6110 at 131.518 kb on + strand, within Atu6110 at 131.518 kb on + strand, within Atu6110 at 131.518 kb on + strand, within Atu6110 at 131.526 kb on - strand, within Atu6110 at 131.526 kb on - strand, within Atu6110 at 131.526 kb on - strand, within Atu6110 at 131.537 kb on - strand, within Atu6110 at 131.644 kb on - strand, within Atu6110 at 131.665 kb on - strand, within Atu6110 at 131.665 kb on - strand, within Atu6110 at 131.734 kb on + strand, within Atu6110 at 131.734 kb on + strand, within Atu6110 at 131.736 kb on + strand, within Atu6110 at 131.904 kb on + strand, within Atu6110 at 131.914 kb on + strand, within Atu6110 at 131.918 kb on - strand, within Atu6110 at 131.963 kb on - strand, within Atu6110 at 131.981 kb on + strand, within Atu6110 at 132.020 kb on + strand, within Atu6110 at 132.022 kb on + strand, within Atu6110 at 132.028 kb on - strand, within Atu6110 at 132.079 kb on + strand, within Atu6110 at 132.097 kb on - strand, within Atu6110 at 132.097 kb on - strand, within Atu6110 at 132.097 kb on - strand, within Atu6110 at 132.102 kb on - strand, within Atu6110 at 132.102 kb on - strand, within Atu6110 at 132.112 kb on - strand, within Atu6110 at 132.123 kb on + strand, within Atu6110 at 132.163 kb on - strand, within Atu6110 at 132.199 kb on + strand at 132.213 kb on + strand at 132.246 kb on + strand at 132.254 kb on - strand at 132.372 kb on - strand at 132.558 kb on - strand, within Atu6111 at 132.623 kb on + strand, within Atu6111 at 132.672 kb on - strand, within Atu6111 at 132.698 kb on - strand, within Atu6111 at 132.698 kb on - strand, within Atu6111 at 132.731 kb on - strand, within Atu6111 at 132.738 kb on + strand, within Atu6111 at 132.858 kb on + strand, within Atu6111 at 132.877 kb on - strand, within Atu6111 at 132.920 kb on - strand, within Atu6111 at 132.920 kb on - strand, within Atu6111 at 132.977 kb on - strand, within Atu6111 at 133.044 kb on + strand, within Atu6111 at 133.047 kb on - strand, within Atu6111 at 133.057 kb on - strand, within Atu6111 at 133.120 kb on - strand at 133.125 kb on - strand at 133.209 kb on + strand at 133.284 kb on + strand at 133.323 kb on + strand at 133.393 kb on - strand at 133.407 kb on + strand at 133.514 kb on + strand at 133.527 kb on + strand at 133.527 kb on + strand at 133.559 kb on + strand at 133.596 kb on - strand at 133.650 kb on + strand, within Atu6112 at 133.673 kb on - strand, within Atu6112 at 133.704 kb on - strand, within Atu6112 at 133.829 kb on + strand, within Atu6112 at 133.830 kb on + strand, within Atu6112 at 134.068 kb on - strand, within Atu6112 at 134.124 kb on + strand, within Atu6112 at 134.145 kb on - strand, within Atu6112 at 134.154 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) remove 131,319 + -1.3 131,337 - +0.1 131,445 + -1.2 131,453 - Atu6110 0.10 +1.2 131,477 + Atu6110 0.13 +0.5 131,477 + Atu6110 0.13 +0.7 131,477 + Atu6110 0.13 -0.9 131,518 + Atu6110 0.17 -0.0 131,518 + Atu6110 0.17 +0.2 131,518 + Atu6110 0.17 +0.5 131,518 + Atu6110 0.17 +0.7 131,518 + Atu6110 0.17 -0.6 131,526 - Atu6110 0.18 -0.6 131,526 - Atu6110 0.18 -0.2 131,526 - Atu6110 0.18 +1.0 131,537 - Atu6110 0.19 +0.0 131,644 - Atu6110 0.31 +0.5 131,665 - Atu6110 0.33 +1.8 131,665 - Atu6110 0.33 +1.0 131,734 + Atu6110 0.40 +1.1 131,734 + Atu6110 0.40 +0.0 131,736 + Atu6110 0.41 +1.3 131,904 + Atu6110 0.59 -0.3 131,914 + Atu6110 0.60 -0.1 131,918 - Atu6110 0.60 -0.9 131,963 - Atu6110 0.65 +2.0 131,981 + Atu6110 0.67 -0.4 132,020 + Atu6110 0.71 +0.0 132,022 + Atu6110 0.71 +0.3 132,028 - Atu6110 0.72 -0.1 132,079 + Atu6110 0.78 -0.1 132,097 - Atu6110 0.80 -0.6 132,097 - Atu6110 0.80 -0.3 132,097 - Atu6110 0.80 -0.0 132,102 - Atu6110 0.80 -0.4 132,102 - Atu6110 0.80 -0.3 132,112 - Atu6110 0.81 -0.2 132,123 + Atu6110 0.82 +0.5 132,163 - Atu6110 0.87 +0.2 132,199 + -0.3 132,213 + +0.4 132,246 + +0.6 132,254 - +0.5 132,372 - +2.0 132,558 - Atu6111 0.30 +0.7 132,623 + Atu6111 0.37 -1.0 132,672 - Atu6111 0.42 +0.3 132,698 - Atu6111 0.45 -0.1 132,698 - Atu6111 0.45 +0.8 132,731 - Atu6111 0.49 +0.2 132,738 + Atu6111 0.49 +1.3 132,858 + Atu6111 0.63 +0.2 132,877 - Atu6111 0.65 +0.8 132,920 - Atu6111 0.69 -0.3 132,920 - Atu6111 0.69 +0.6 132,977 - Atu6111 0.76 +0.2 133,044 + Atu6111 0.83 +0.7 133,047 - Atu6111 0.83 -1.0 133,057 - Atu6111 0.84 -0.1 133,120 - +0.2 133,125 - -0.8 133,209 + +1.5 133,284 + -0.5 133,323 + +1.3 133,393 - +0.2 133,407 + +0.2 133,514 + +3.6 133,527 + -0.4 133,527 + -0.2 133,559 + +0.0 133,596 - +1.0 133,650 + Atu6112 0.14 -0.3 133,673 - Atu6112 0.17 -1.2 133,704 - Atu6112 0.22 +1.1 133,829 + Atu6112 0.41 +2.7 133,830 + Atu6112 0.41 +0.5 134,068 - Atu6112 0.78 +0.2 134,124 + Atu6112 0.86 -0.1 134,145 - Atu6112 0.90 +0.2 134,154 - +0.6
Or see this region's nucleotide sequence