Experiment: L-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0658 and Atu0659 are separated by 162 nucleotides Atu0659 and Atu0660 are separated by 257 nucleotides Atu0660 and Atu0661 overlap by 4 nucleotides
Atu0658: Atu0658 - phosphate permease, at 652,090 to 653,595
Atu0658
Atu0659: Atu0659 - NTP pyrophosphohydrolase, MutT family, at 653,758 to 654,237
Atu0659
Atu0660: Atu0660 - hydrolase, at 654,495 to 655,241
Atu0660
Atu0661: Atu0661 - glycosyltransferase, at 655,238 to 656,575
Atu0661
Position (kb) 654
655
656 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 653.540 kb on - strand at 653.599 kb on - strand at 653.633 kb on - strand at 653.675 kb on + strand at 653.838 kb on + strand, within Atu0659 at 653.844 kb on + strand, within Atu0659 at 653.917 kb on + strand, within Atu0659 at 653.950 kb on - strand, within Atu0659 at 654.020 kb on + strand, within Atu0659 at 654.081 kb on - strand, within Atu0659 at 654.157 kb on + strand, within Atu0659 at 654.158 kb on - strand, within Atu0659 at 654.160 kb on - strand, within Atu0659 at 654.165 kb on - strand, within Atu0659 at 654.175 kb on - strand, within Atu0659 at 654.212 kb on + strand at 654.215 kb on - strand at 654.315 kb on - strand at 654.328 kb on - strand at 654.330 kb on - strand at 654.339 kb on - strand at 654.422 kb on - strand at 654.450 kb on - strand at 654.504 kb on + strand at 654.504 kb on + strand at 654.506 kb on + strand at 654.524 kb on - strand at 654.598 kb on + strand, within Atu0660 at 654.606 kb on - strand, within Atu0660 at 654.660 kb on + strand, within Atu0660 at 654.930 kb on + strand, within Atu0660 at 654.930 kb on + strand, within Atu0660 at 654.946 kb on + strand, within Atu0660 at 654.977 kb on + strand, within Atu0660 at 654.980 kb on + strand, within Atu0660 at 654.988 kb on - strand, within Atu0660 at 654.988 kb on - strand, within Atu0660 at 654.989 kb on - strand, within Atu0660 at 655.034 kb on - strand, within Atu0660 at 655.104 kb on - strand, within Atu0660 at 655.113 kb on + strand, within Atu0660 at 655.127 kb on - strand, within Atu0660 at 655.349 kb on - strand at 655.397 kb on - strand, within Atu0661 at 655.399 kb on + strand, within Atu0661 at 655.407 kb on - strand, within Atu0661 at 655.602 kb on - strand, within Atu0661 at 655.642 kb on - strand, within Atu0661 at 655.791 kb on - strand, within Atu0661 at 655.806 kb on + strand, within Atu0661 at 655.813 kb on - strand, within Atu0661 at 655.814 kb on - strand, within Atu0661 at 655.841 kb on + strand, within Atu0661 at 655.847 kb on + strand, within Atu0661 at 655.953 kb on - strand, within Atu0661 at 656.059 kb on + strand, within Atu0661 at 656.084 kb on - strand, within Atu0661 at 656.175 kb on + strand, within Atu0661 at 656.208 kb on + strand, within Atu0661 at 656.232 kb on + strand, within Atu0661
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) remove 653,540 - -0.5 653,599 - -0.4 653,633 - -1.9 653,675 + -1.9 653,838 + Atu0659 0.17 -3.0 653,844 + Atu0659 0.18 -0.2 653,917 + Atu0659 0.33 -2.3 653,950 - Atu0659 0.40 -0.7 654,020 + Atu0659 0.55 -1.7 654,081 - Atu0659 0.67 -2.2 654,157 + Atu0659 0.83 -2.2 654,158 - Atu0659 0.83 -1.4 654,160 - Atu0659 0.84 -0.1 654,165 - Atu0659 0.85 -3.1 654,175 - Atu0659 0.87 -2.3 654,212 + -1.7 654,215 - -2.6 654,315 - -0.4 654,328 - -1.0 654,330 - +0.4 654,339 - -0.0 654,422 - -0.1 654,450 - +1.2 654,504 + +0.1 654,504 + +0.4 654,506 + +0.7 654,524 - +1.2 654,598 + Atu0660 0.14 +0.1 654,606 - Atu0660 0.15 +0.0 654,660 + Atu0660 0.22 +0.9 654,930 + Atu0660 0.58 +0.2 654,930 + Atu0660 0.58 +0.9 654,946 + Atu0660 0.60 +0.9 654,977 + Atu0660 0.65 -0.2 654,980 + Atu0660 0.65 +0.1 654,988 - Atu0660 0.66 -0.7 654,988 - Atu0660 0.66 +0.5 654,989 - Atu0660 0.66 +1.3 655,034 - Atu0660 0.72 +0.6 655,104 - Atu0660 0.82 +0.8 655,113 + Atu0660 0.83 +0.3 655,127 - Atu0660 0.85 +1.6 655,349 - +1.1 655,397 - Atu0661 0.12 -2.3 655,399 + Atu0661 0.12 -1.0 655,407 - Atu0661 0.13 -0.0 655,602 - Atu0661 0.27 -0.6 655,642 - Atu0661 0.30 -0.5 655,791 - Atu0661 0.41 +0.2 655,806 + Atu0661 0.42 -0.1 655,813 - Atu0661 0.43 +0.3 655,814 - Atu0661 0.43 +0.2 655,841 + Atu0661 0.45 +0.0 655,847 + Atu0661 0.46 +0.5 655,953 - Atu0661 0.53 -0.4 656,059 + Atu0661 0.61 +0.3 656,084 - Atu0661 0.63 +0.4 656,175 + Atu0661 0.70 +0.2 656,208 + Atu0661 0.72 +0.4 656,232 + Atu0661 0.74 +0.0
Or see this region's nucleotide sequence