Experiment: D-Maltose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS20030 and ABIE41_RS20035 overlap by 4 nucleotides ABIE41_RS20035 and ABIE41_RS20040 are separated by 102 nucleotides ABIE41_RS20040 and ABIE41_RS20045 overlap by 1 nucleotides
ABIE41_RS20030: ABIE41_RS20030 - branched-chain amino acid ABC transporter permease, at 4,116,664 to 4,117,686
_RS20030
ABIE41_RS20035: ABIE41_RS20035 - ABC transporter ATP-binding protein, at 4,117,683 to 4,118,426
_RS20035
ABIE41_RS20040: ABIE41_RS20040 - ABC transporter ATP-binding protein, at 4,118,529 to 4,119,266
_RS20040
ABIE41_RS20045: ABIE41_RS20045 - Gfo/Idh/MocA family oxidoreductase, at 4,119,266 to 4,120,312
_RS20045
Position (kb) 4118
4119
4120 Strain fitness (log2 ratio) -1
0
1
2 at 4117.892 kb on + strand, within ABIE41_RS20035 at 4117.892 kb on + strand, within ABIE41_RS20035 at 4117.893 kb on - strand, within ABIE41_RS20035 at 4117.893 kb on - strand, within ABIE41_RS20035 at 4117.893 kb on - strand, within ABIE41_RS20035 at 4118.128 kb on - strand, within ABIE41_RS20035 at 4118.128 kb on - strand, within ABIE41_RS20035 at 4118.413 kb on - strand at 4118.413 kb on - strand at 4118.413 kb on - strand at 4118.424 kb on + strand at 4118.424 kb on + strand at 4118.424 kb on + strand at 4118.572 kb on - strand at 4118.778 kb on + strand, within ABIE41_RS20040 at 4118.778 kb on + strand, within ABIE41_RS20040 at 4118.779 kb on - strand, within ABIE41_RS20040 at 4118.779 kb on - strand, within ABIE41_RS20040 at 4118.779 kb on - strand, within ABIE41_RS20040 at 4119.265 kb on - strand at 4119.265 kb on - strand at 4119.740 kb on + strand, within ABIE41_RS20045 at 4120.004 kb on + strand, within ABIE41_RS20045 at 4120.028 kb on + strand, within ABIE41_RS20045 at 4120.028 kb on + strand, within ABIE41_RS20045 at 4120.028 kb on + strand, within ABIE41_RS20045 at 4120.028 kb on + strand, within ABIE41_RS20045 at 4120.029 kb on - strand, within ABIE41_RS20045 at 4120.085 kb on + strand, within ABIE41_RS20045 at 4120.085 kb on + strand, within ABIE41_RS20045 at 4120.086 kb on - strand, within ABIE41_RS20045
Per-strain Table
Position Strand Gene LocusTag Fraction D-Maltose (C) remove 4,117,892 + ABIE41_RS20035 0.28 +1.0 4,117,892 + ABIE41_RS20035 0.28 +1.8 4,117,893 - ABIE41_RS20035 0.28 -0.3 4,117,893 - ABIE41_RS20035 0.28 +0.1 4,117,893 - ABIE41_RS20035 0.28 +0.7 4,118,128 - ABIE41_RS20035 0.60 +0.3 4,118,128 - ABIE41_RS20035 0.60 +0.3 4,118,413 - +1.7 4,118,413 - +0.3 4,118,413 - +1.1 4,118,424 + +0.5 4,118,424 + -0.3 4,118,424 + +0.8 4,118,572 - +1.2 4,118,778 + ABIE41_RS20040 0.34 +0.4 4,118,778 + ABIE41_RS20040 0.34 +0.4 4,118,779 - ABIE41_RS20040 0.34 +1.9 4,118,779 - ABIE41_RS20040 0.34 -0.1 4,118,779 - ABIE41_RS20040 0.34 +0.1 4,119,265 - -0.4 4,119,265 - -0.2 4,119,740 + ABIE41_RS20045 0.45 -1.1 4,120,004 + ABIE41_RS20045 0.70 -1.4 4,120,028 + ABIE41_RS20045 0.73 +1.1 4,120,028 + ABIE41_RS20045 0.73 -0.5 4,120,028 + ABIE41_RS20045 0.73 +1.0 4,120,028 + ABIE41_RS20045 0.73 +0.6 4,120,029 - ABIE41_RS20045 0.73 +0.5 4,120,085 + ABIE41_RS20045 0.78 -0.6 4,120,085 + ABIE41_RS20045 0.78 +0.4 4,120,086 - ABIE41_RS20045 0.78 +0.5
Or see this region's nucleotide sequence