Strain Fitness in Bosea sp. OAE506 around ABIE41_RS20025

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS20020 and ABIE41_RS20025 are separated by 188 nucleotidesABIE41_RS20025 and ABIE41_RS20030 overlap by 4 nucleotides ABIE41_RS20020: ABIE41_RS20020 - ABC transporter substrate-binding protein, at 4,114,464 to 4,115,600 _RS20020 ABIE41_RS20025: ABIE41_RS20025 - branched-chain amino acid ABC transporter permease, at 4,115,789 to 4,116,667 _RS20025 ABIE41_RS20030: ABIE41_RS20030 - branched-chain amino acid ABC transporter permease, at 4,116,664 to 4,117,686 _RS20030 Position (kb) 4115 4116 4117Strain fitness (log2 ratio) -2 -1 0 1 2at 4114.863 kb on + strand, within ABIE41_RS20020at 4114.863 kb on + strand, within ABIE41_RS20020at 4114.863 kb on + strand, within ABIE41_RS20020at 4114.863 kb on + strand, within ABIE41_RS20020at 4114.863 kb on + strand, within ABIE41_RS20020at 4114.864 kb on - strand, within ABIE41_RS20020at 4114.864 kb on - strand, within ABIE41_RS20020at 4114.864 kb on - strand, within ABIE41_RS20020at 4114.864 kb on - strand, within ABIE41_RS20020at 4114.864 kb on - strand, within ABIE41_RS20020at 4114.864 kb on - strand, within ABIE41_RS20020at 4114.864 kb on - strand, within ABIE41_RS20020at 4114.864 kb on - strand, within ABIE41_RS20020at 4114.917 kb on + strand, within ABIE41_RS20020at 4115.124 kb on + strand, within ABIE41_RS20020at 4115.124 kb on + strand, within ABIE41_RS20020at 4115.124 kb on + strand, within ABIE41_RS20020at 4115.125 kb on - strand, within ABIE41_RS20020at 4115.335 kb on - strand, within ABIE41_RS20020at 4115.335 kb on - strand, within ABIE41_RS20020at 4115.341 kb on - strand, within ABIE41_RS20020at 4115.341 kb on - strand, within ABIE41_RS20020at 4115.370 kb on + strand, within ABIE41_RS20020at 4115.382 kb on + strand, within ABIE41_RS20020at 4115.382 kb on + strand, within ABIE41_RS20020at 4115.382 kb on + strand, within ABIE41_RS20020at 4115.382 kb on + strand, within ABIE41_RS20020at 4115.383 kb on - strand, within ABIE41_RS20020at 4115.383 kb on - strand, within ABIE41_RS20020at 4115.383 kb on - strand, within ABIE41_RS20020at 4115.383 kb on - strand, within ABIE41_RS20020at 4115.383 kb on - strand, within ABIE41_RS20020at 4115.383 kb on - strand, within ABIE41_RS20020at 4115.383 kb on - strand, within ABIE41_RS20020at 4115.383 kb on - strand, within ABIE41_RS20020at 4115.384 kb on + strand, within ABIE41_RS20020at 4115.384 kb on + strand, within ABIE41_RS20020at 4115.385 kb on - strand, within ABIE41_RS20020at 4115.385 kb on - strand, within ABIE41_RS20020at 4115.617 kb on - strandat 4115.754 kb on + strandat 4115.755 kb on - strandat 4115.755 kb on - strandat 4115.755 kb on - strandat 4115.755 kb on - strandat 4115.807 kb on + strandat 4115.808 kb on - strandat 4115.808 kb on - strandat 4115.840 kb on + strandat 4115.840 kb on + strandat 4115.841 kb on - strandat 4115.841 kb on - strandat 4115.841 kb on - strandat 4115.841 kb on - strandat 4116.016 kb on - strand, within ABIE41_RS20025at 4116.114 kb on - strand, within ABIE41_RS20025at 4116.532 kb on - strand, within ABIE41_RS20025at 4116.560 kb on + strand, within ABIE41_RS20025at 4116.560 kb on + strand, within ABIE41_RS20025at 4116.560 kb on + strand, within ABIE41_RS20025at 4116.561 kb on - strand, within ABIE41_RS20025at 4116.561 kb on - strand, within ABIE41_RS20025at 4116.809 kb on - strand, within ABIE41_RS20030at 4116.817 kb on + strand, within ABIE41_RS20030at 4116.817 kb on + strand, within ABIE41_RS20030at 4116.817 kb on + strand, within ABIE41_RS20030at 4116.817 kb on + strand, within ABIE41_RS20030at 4116.817 kb on + strand, within ABIE41_RS20030at 4116.817 kb on + strand, within ABIE41_RS20030at 4116.817 kb on + strand, within ABIE41_RS20030at 4116.817 kb on + strand, within ABIE41_RS20030at 4116.818 kb on - strand, within ABIE41_RS20030at 4116.818 kb on - strand, within ABIE41_RS20030at 4116.818 kb on - strand, within ABIE41_RS20030at 4116.818 kb on - strand, within ABIE41_RS20030at 4116.818 kb on - strand, within ABIE41_RS20030at 4116.818 kb on - strand, within ABIE41_RS20030at 4116.818 kb on - strand, within ABIE41_RS20030at 4116.818 kb on - strand, within ABIE41_RS20030at 4116.818 kb on - strand, within ABIE41_RS20030at 4116.819 kb on - strand, within ABIE41_RS20030at 4116.880 kb on + strand, within ABIE41_RS20030at 4116.880 kb on + strand, within ABIE41_RS20030at 4116.932 kb on - strand, within ABIE41_RS20030at 4116.958 kb on + strand, within ABIE41_RS20030at 4116.959 kb on - strand, within ABIE41_RS20030at 4116.959 kb on - strand, within ABIE41_RS20030at 4117.057 kb on + strand, within ABIE41_RS20030at 4117.057 kb on + strand, within ABIE41_RS20030at 4117.057 kb on + strand, within ABIE41_RS20030at 4117.058 kb on - strand, within ABIE41_RS20030at 4117.343 kb on - strand, within ABIE41_RS20030at 4117.343 kb on - strand, within ABIE41_RS20030at 4117.399 kb on + strand, within ABIE41_RS20030at 4117.399 kb on + strand, within ABIE41_RS20030

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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4,114,863 + ABIE41_RS20020 0.35 -0.3
4,114,863 + ABIE41_RS20020 0.35 -0.5
4,114,863 + ABIE41_RS20020 0.35 -0.2
4,114,863 + ABIE41_RS20020 0.35 -0.6
4,114,863 + ABIE41_RS20020 0.35 -2.6
4,114,864 - ABIE41_RS20020 0.35 -0.5
4,114,864 - ABIE41_RS20020 0.35 -0.4
4,114,864 - ABIE41_RS20020 0.35 -0.5
4,114,864 - ABIE41_RS20020 0.35 -0.1
4,114,864 - ABIE41_RS20020 0.35 +0.0
4,114,864 - ABIE41_RS20020 0.35 +1.1
4,114,864 - ABIE41_RS20020 0.35 -0.5
4,114,864 - ABIE41_RS20020 0.35 -0.3
4,114,917 + ABIE41_RS20020 0.40 +0.1
4,115,124 + ABIE41_RS20020 0.58 -1.1
4,115,124 + ABIE41_RS20020 0.58 -0.3
4,115,124 + ABIE41_RS20020 0.58 +0.6
4,115,125 - ABIE41_RS20020 0.58 +1.0
4,115,335 - ABIE41_RS20020 0.77 -0.1
4,115,335 - ABIE41_RS20020 0.77 -0.1
4,115,341 - ABIE41_RS20020 0.77 +0.3
4,115,341 - ABIE41_RS20020 0.77 -0.7
4,115,370 + ABIE41_RS20020 0.80 +0.3
4,115,382 + ABIE41_RS20020 0.81 -0.5
4,115,382 + ABIE41_RS20020 0.81 -0.1
4,115,382 + ABIE41_RS20020 0.81 +0.5
4,115,382 + ABIE41_RS20020 0.81 +1.2
4,115,383 - ABIE41_RS20020 0.81 +0.0
4,115,383 - ABIE41_RS20020 0.81 +0.5
4,115,383 - ABIE41_RS20020 0.81 -0.6
4,115,383 - ABIE41_RS20020 0.81 -0.8
4,115,383 - ABIE41_RS20020 0.81 +2.5
4,115,383 - ABIE41_RS20020 0.81 -1.6
4,115,383 - ABIE41_RS20020 0.81 +0.6
4,115,383 - ABIE41_RS20020 0.81 +0.1
4,115,384 + ABIE41_RS20020 0.81 -0.1
4,115,384 + ABIE41_RS20020 0.81 +0.2
4,115,385 - ABIE41_RS20020 0.81 -0.7
4,115,385 - ABIE41_RS20020 0.81 +0.2
4,115,617 - +2.2
4,115,754 + +0.2
4,115,755 - -1.1
4,115,755 - -0.7
4,115,755 - -0.2
4,115,755 - -0.5
4,115,807 + -0.9
4,115,808 - -0.9
4,115,808 - +0.2
4,115,840 + -0.6
4,115,840 + +1.1
4,115,841 - -1.4
4,115,841 - -1.1
4,115,841 - -1.4
4,115,841 - -0.9
4,116,016 - ABIE41_RS20025 0.26 +0.5
4,116,114 - ABIE41_RS20025 0.37 +0.8
4,116,532 - ABIE41_RS20025 0.85 -1.6
4,116,560 + ABIE41_RS20025 0.88 +0.3
4,116,560 + ABIE41_RS20025 0.88 +0.0
4,116,560 + ABIE41_RS20025 0.88 +1.5
4,116,561 - ABIE41_RS20025 0.88 +0.3
4,116,561 - ABIE41_RS20025 0.88 -1.2
4,116,809 - ABIE41_RS20030 0.14 -1.0
4,116,817 + ABIE41_RS20030 0.15 -0.4
4,116,817 + ABIE41_RS20030 0.15 +1.7
4,116,817 + ABIE41_RS20030 0.15 -0.8
4,116,817 + ABIE41_RS20030 0.15 -0.3
4,116,817 + ABIE41_RS20030 0.15 -1.2
4,116,817 + ABIE41_RS20030 0.15 -0.8
4,116,817 + ABIE41_RS20030 0.15 +0.4
4,116,817 + ABIE41_RS20030 0.15 +0.7
4,116,818 - ABIE41_RS20030 0.15 +0.7
4,116,818 - ABIE41_RS20030 0.15 +0.9
4,116,818 - ABIE41_RS20030 0.15 +0.7
4,116,818 - ABIE41_RS20030 0.15 +0.2
4,116,818 - ABIE41_RS20030 0.15 +0.5
4,116,818 - ABIE41_RS20030 0.15 -1.0
4,116,818 - ABIE41_RS20030 0.15 +0.1
4,116,818 - ABIE41_RS20030 0.15 -0.1
4,116,818 - ABIE41_RS20030 0.15 -0.2
4,116,819 - ABIE41_RS20030 0.15 -0.1
4,116,880 + ABIE41_RS20030 0.21 +0.6
4,116,880 + ABIE41_RS20030 0.21 +0.3
4,116,932 - ABIE41_RS20030 0.26 -1.8
4,116,958 + ABIE41_RS20030 0.29 +0.8
4,116,959 - ABIE41_RS20030 0.29 -0.4
4,116,959 - ABIE41_RS20030 0.29 +0.1
4,117,057 + ABIE41_RS20030 0.38 -0.8
4,117,057 + ABIE41_RS20030 0.38 +0.9
4,117,057 + ABIE41_RS20030 0.38 -0.6
4,117,058 - ABIE41_RS20030 0.39 +0.1
4,117,343 - ABIE41_RS20030 0.66 -0.5
4,117,343 - ABIE41_RS20030 0.66 -0.2
4,117,399 + ABIE41_RS20030 0.72 +0.0
4,117,399 + ABIE41_RS20030 0.72 +0.5

Or see this region's nucleotide sequence