Experiment: D-Maltose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS20020 and ABIE41_RS20025 are separated by 188 nucleotides ABIE41_RS20025 and ABIE41_RS20030 overlap by 4 nucleotides
ABIE41_RS20020: ABIE41_RS20020 - ABC transporter substrate-binding protein, at 4,114,464 to 4,115,600
_RS20020
ABIE41_RS20025: ABIE41_RS20025 - branched-chain amino acid ABC transporter permease, at 4,115,789 to 4,116,667
_RS20025
ABIE41_RS20030: ABIE41_RS20030 - branched-chain amino acid ABC transporter permease, at 4,116,664 to 4,117,686
_RS20030
Position (kb)
4115
4116
4117 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4114.863 kb on + strand, within ABIE41_RS20020 at 4114.863 kb on + strand, within ABIE41_RS20020 at 4114.863 kb on + strand, within ABIE41_RS20020 at 4114.863 kb on + strand, within ABIE41_RS20020 at 4114.863 kb on + strand, within ABIE41_RS20020 at 4114.864 kb on - strand, within ABIE41_RS20020 at 4114.864 kb on - strand, within ABIE41_RS20020 at 4114.864 kb on - strand, within ABIE41_RS20020 at 4114.864 kb on - strand, within ABIE41_RS20020 at 4114.864 kb on - strand, within ABIE41_RS20020 at 4114.864 kb on - strand, within ABIE41_RS20020 at 4114.864 kb on - strand, within ABIE41_RS20020 at 4114.864 kb on - strand, within ABIE41_RS20020 at 4114.917 kb on + strand, within ABIE41_RS20020 at 4115.124 kb on + strand, within ABIE41_RS20020 at 4115.124 kb on + strand, within ABIE41_RS20020 at 4115.124 kb on + strand, within ABIE41_RS20020 at 4115.125 kb on - strand, within ABIE41_RS20020 at 4115.335 kb on - strand, within ABIE41_RS20020 at 4115.335 kb on - strand, within ABIE41_RS20020 at 4115.341 kb on - strand, within ABIE41_RS20020 at 4115.341 kb on - strand, within ABIE41_RS20020 at 4115.370 kb on + strand, within ABIE41_RS20020 at 4115.382 kb on + strand, within ABIE41_RS20020 at 4115.382 kb on + strand, within ABIE41_RS20020 at 4115.382 kb on + strand, within ABIE41_RS20020 at 4115.382 kb on + strand, within ABIE41_RS20020 at 4115.383 kb on - strand, within ABIE41_RS20020 at 4115.383 kb on - strand, within ABIE41_RS20020 at 4115.383 kb on - strand, within ABIE41_RS20020 at 4115.383 kb on - strand, within ABIE41_RS20020 at 4115.383 kb on - strand, within ABIE41_RS20020 at 4115.383 kb on - strand, within ABIE41_RS20020 at 4115.383 kb on - strand, within ABIE41_RS20020 at 4115.383 kb on - strand, within ABIE41_RS20020 at 4115.384 kb on + strand, within ABIE41_RS20020 at 4115.384 kb on + strand, within ABIE41_RS20020 at 4115.385 kb on - strand, within ABIE41_RS20020 at 4115.385 kb on - strand, within ABIE41_RS20020 at 4115.617 kb on - strand at 4115.754 kb on + strand at 4115.755 kb on - strand at 4115.755 kb on - strand at 4115.755 kb on - strand at 4115.755 kb on - strand at 4115.807 kb on + strand at 4115.808 kb on - strand at 4115.808 kb on - strand at 4115.840 kb on + strand at 4115.840 kb on + strand at 4115.841 kb on - strand at 4115.841 kb on - strand at 4115.841 kb on - strand at 4115.841 kb on - strand at 4116.016 kb on - strand, within ABIE41_RS20025 at 4116.114 kb on - strand, within ABIE41_RS20025 at 4116.532 kb on - strand, within ABIE41_RS20025 at 4116.560 kb on + strand, within ABIE41_RS20025 at 4116.560 kb on + strand, within ABIE41_RS20025 at 4116.560 kb on + strand, within ABIE41_RS20025 at 4116.561 kb on - strand, within ABIE41_RS20025 at 4116.561 kb on - strand, within ABIE41_RS20025 at 4116.809 kb on - strand, within ABIE41_RS20030 at 4116.817 kb on + strand, within ABIE41_RS20030 at 4116.817 kb on + strand, within ABIE41_RS20030 at 4116.817 kb on + strand, within ABIE41_RS20030 at 4116.817 kb on + strand, within ABIE41_RS20030 at 4116.817 kb on + strand, within ABIE41_RS20030 at 4116.817 kb on + strand, within ABIE41_RS20030 at 4116.817 kb on + strand, within ABIE41_RS20030 at 4116.817 kb on + strand, within ABIE41_RS20030 at 4116.818 kb on - strand, within ABIE41_RS20030 at 4116.818 kb on - strand, within ABIE41_RS20030 at 4116.818 kb on - strand, within ABIE41_RS20030 at 4116.818 kb on - strand, within ABIE41_RS20030 at 4116.818 kb on - strand, within ABIE41_RS20030 at 4116.818 kb on - strand, within ABIE41_RS20030 at 4116.818 kb on - strand, within ABIE41_RS20030 at 4116.818 kb on - strand, within ABIE41_RS20030 at 4116.818 kb on - strand, within ABIE41_RS20030 at 4116.819 kb on - strand, within ABIE41_RS20030 at 4116.880 kb on + strand, within ABIE41_RS20030 at 4116.880 kb on + strand, within ABIE41_RS20030 at 4116.932 kb on - strand, within ABIE41_RS20030 at 4116.958 kb on + strand, within ABIE41_RS20030 at 4116.959 kb on - strand, within ABIE41_RS20030 at 4116.959 kb on - strand, within ABIE41_RS20030 at 4117.057 kb on + strand, within ABIE41_RS20030 at 4117.057 kb on + strand, within ABIE41_RS20030 at 4117.057 kb on + strand, within ABIE41_RS20030 at 4117.058 kb on - strand, within ABIE41_RS20030 at 4117.343 kb on - strand, within ABIE41_RS20030 at 4117.343 kb on - strand, within ABIE41_RS20030 at 4117.399 kb on + strand, within ABIE41_RS20030 at 4117.399 kb on + strand, within ABIE41_RS20030
Per-strain Table
Position Strand Gene LocusTag Fraction D-Maltose (C) remove 4,114,863 + ABIE41_RS20020 0.35 -0.3 4,114,863 + ABIE41_RS20020 0.35 -0.5 4,114,863 + ABIE41_RS20020 0.35 -0.2 4,114,863 + ABIE41_RS20020 0.35 -0.6 4,114,863 + ABIE41_RS20020 0.35 -2.6 4,114,864 - ABIE41_RS20020 0.35 -0.5 4,114,864 - ABIE41_RS20020 0.35 -0.4 4,114,864 - ABIE41_RS20020 0.35 -0.5 4,114,864 - ABIE41_RS20020 0.35 -0.1 4,114,864 - ABIE41_RS20020 0.35 +0.0 4,114,864 - ABIE41_RS20020 0.35 +1.1 4,114,864 - ABIE41_RS20020 0.35 -0.5 4,114,864 - ABIE41_RS20020 0.35 -0.3 4,114,917 + ABIE41_RS20020 0.40 +0.1 4,115,124 + ABIE41_RS20020 0.58 -1.1 4,115,124 + ABIE41_RS20020 0.58 -0.3 4,115,124 + ABIE41_RS20020 0.58 +0.6 4,115,125 - ABIE41_RS20020 0.58 +1.0 4,115,335 - ABIE41_RS20020 0.77 -0.1 4,115,335 - ABIE41_RS20020 0.77 -0.1 4,115,341 - ABIE41_RS20020 0.77 +0.3 4,115,341 - ABIE41_RS20020 0.77 -0.7 4,115,370 + ABIE41_RS20020 0.80 +0.3 4,115,382 + ABIE41_RS20020 0.81 -0.5 4,115,382 + ABIE41_RS20020 0.81 -0.1 4,115,382 + ABIE41_RS20020 0.81 +0.5 4,115,382 + ABIE41_RS20020 0.81 +1.2 4,115,383 - ABIE41_RS20020 0.81 +0.0 4,115,383 - ABIE41_RS20020 0.81 +0.5 4,115,383 - ABIE41_RS20020 0.81 -0.6 4,115,383 - ABIE41_RS20020 0.81 -0.8 4,115,383 - ABIE41_RS20020 0.81 +2.5 4,115,383 - ABIE41_RS20020 0.81 -1.6 4,115,383 - ABIE41_RS20020 0.81 +0.6 4,115,383 - ABIE41_RS20020 0.81 +0.1 4,115,384 + ABIE41_RS20020 0.81 -0.1 4,115,384 + ABIE41_RS20020 0.81 +0.2 4,115,385 - ABIE41_RS20020 0.81 -0.7 4,115,385 - ABIE41_RS20020 0.81 +0.2 4,115,617 - +2.2 4,115,754 + +0.2 4,115,755 - -1.1 4,115,755 - -0.7 4,115,755 - -0.2 4,115,755 - -0.5 4,115,807 + -0.9 4,115,808 - -0.9 4,115,808 - +0.2 4,115,840 + -0.6 4,115,840 + +1.1 4,115,841 - -1.4 4,115,841 - -1.1 4,115,841 - -1.4 4,115,841 - -0.9 4,116,016 - ABIE41_RS20025 0.26 +0.5 4,116,114 - ABIE41_RS20025 0.37 +0.8 4,116,532 - ABIE41_RS20025 0.85 -1.6 4,116,560 + ABIE41_RS20025 0.88 +0.3 4,116,560 + ABIE41_RS20025 0.88 +0.0 4,116,560 + ABIE41_RS20025 0.88 +1.5 4,116,561 - ABIE41_RS20025 0.88 +0.3 4,116,561 - ABIE41_RS20025 0.88 -1.2 4,116,809 - ABIE41_RS20030 0.14 -1.0 4,116,817 + ABIE41_RS20030 0.15 -0.4 4,116,817 + ABIE41_RS20030 0.15 +1.7 4,116,817 + ABIE41_RS20030 0.15 -0.8 4,116,817 + ABIE41_RS20030 0.15 -0.3 4,116,817 + ABIE41_RS20030 0.15 -1.2 4,116,817 + ABIE41_RS20030 0.15 -0.8 4,116,817 + ABIE41_RS20030 0.15 +0.4 4,116,817 + ABIE41_RS20030 0.15 +0.7 4,116,818 - ABIE41_RS20030 0.15 +0.7 4,116,818 - ABIE41_RS20030 0.15 +0.9 4,116,818 - ABIE41_RS20030 0.15 +0.7 4,116,818 - ABIE41_RS20030 0.15 +0.2 4,116,818 - ABIE41_RS20030 0.15 +0.5 4,116,818 - ABIE41_RS20030 0.15 -1.0 4,116,818 - ABIE41_RS20030 0.15 +0.1 4,116,818 - ABIE41_RS20030 0.15 -0.1 4,116,818 - ABIE41_RS20030 0.15 -0.2 4,116,819 - ABIE41_RS20030 0.15 -0.1 4,116,880 + ABIE41_RS20030 0.21 +0.6 4,116,880 + ABIE41_RS20030 0.21 +0.3 4,116,932 - ABIE41_RS20030 0.26 -1.8 4,116,958 + ABIE41_RS20030 0.29 +0.8 4,116,959 - ABIE41_RS20030 0.29 -0.4 4,116,959 - ABIE41_RS20030 0.29 +0.1 4,117,057 + ABIE41_RS20030 0.38 -0.8 4,117,057 + ABIE41_RS20030 0.38 +0.9 4,117,057 + ABIE41_RS20030 0.38 -0.6 4,117,058 - ABIE41_RS20030 0.39 +0.1 4,117,343 - ABIE41_RS20030 0.66 -0.5 4,117,343 - ABIE41_RS20030 0.66 -0.2 4,117,399 + ABIE41_RS20030 0.72 +0.0 4,117,399 + ABIE41_RS20030 0.72 +0.5
Or see this region's nucleotide sequence