Experiment: D-Maltose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS19205 and ABIE41_RS19210 are separated by 16 nucleotides ABIE41_RS19210 and ABIE41_RS19215 are separated by 177 nucleotides ABIE41_RS19215 and ABIE41_RS19220 are separated by 160 nucleotides ABIE41_RS19220 and ABIE41_RS19225 are separated by 2 nucleotides
ABIE41_RS19205: ABIE41_RS19205 - agmatinase, at 3,964,573 to 3,965,529
_RS19205
ABIE41_RS19210: ABIE41_RS19210 - hypothetical protein, at 3,965,546 to 3,965,827
_RS19210
ABIE41_RS19215: ABIE41_RS19215 - SDR family oxidoreductase, at 3,966,005 to 3,966,757
_RS19215
ABIE41_RS19220: ABIE41_RS19220 - 30S ribosomal protein S9, at 3,966,918 to 3,967,397
_RS19220
ABIE41_RS19225: ABIE41_RS19225 - 50S ribosomal protein L13, at 3,967,400 to 3,967,861
_RS19225
Position (kb)
3966
3967 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3965.234 kb on + strand, within ABIE41_RS19205 at 3965.235 kb on - strand, within ABIE41_RS19205 at 3965.235 kb on - strand, within ABIE41_RS19205 at 3965.279 kb on + strand, within ABIE41_RS19205 at 3965.450 kb on + strand at 3965.450 kb on + strand at 3965.451 kb on - strand at 3965.451 kb on - strand at 3965.574 kb on + strand at 3965.574 kb on + strand at 3965.574 kb on + strand at 3965.574 kb on + strand at 3965.574 kb on + strand at 3965.575 kb on - strand, within ABIE41_RS19210 at 3965.575 kb on - strand, within ABIE41_RS19210 at 3965.575 kb on - strand, within ABIE41_RS19210 at 3965.575 kb on - strand, within ABIE41_RS19210 at 3965.575 kb on - strand, within ABIE41_RS19210 at 3965.575 kb on - strand, within ABIE41_RS19210 at 3965.930 kb on - strand at 3965.997 kb on - strand at 3965.997 kb on - strand at 3965.997 kb on - strand at 3966.006 kb on + strand at 3966.007 kb on - strand at 3966.045 kb on + strand at 3966.045 kb on + strand at 3966.045 kb on + strand at 3966.046 kb on - strand at 3966.046 kb on - strand at 3966.046 kb on - strand at 3966.046 kb on - strand at 3966.046 kb on - strand at 3966.046 kb on - strand at 3966.285 kb on + strand, within ABIE41_RS19215 at 3966.286 kb on - strand, within ABIE41_RS19215 at 3966.557 kb on - strand, within ABIE41_RS19215 at 3966.657 kb on + strand, within ABIE41_RS19215 at 3966.658 kb on - strand, within ABIE41_RS19215 at 3966.658 kb on - strand, within ABIE41_RS19215 at 3966.658 kb on - strand, within ABIE41_RS19215 at 3966.676 kb on - strand, within ABIE41_RS19215 at 3966.859 kb on + strand at 3966.860 kb on - strand at 3966.897 kb on + strand at 3966.898 kb on - strand at 3966.898 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Maltose (C) remove 3,965,234 + ABIE41_RS19205 0.69 +0.0 3,965,235 - ABIE41_RS19205 0.69 -0.0 3,965,235 - ABIE41_RS19205 0.69 -1.5 3,965,279 + ABIE41_RS19205 0.74 +0.2 3,965,450 + +0.2 3,965,450 + -1.8 3,965,451 - -1.1 3,965,451 - -0.6 3,965,574 + -0.2 3,965,574 + -0.7 3,965,574 + -0.6 3,965,574 + +0.9 3,965,574 + -0.1 3,965,575 - ABIE41_RS19210 0.10 -0.9 3,965,575 - ABIE41_RS19210 0.10 -1.5 3,965,575 - ABIE41_RS19210 0.10 -0.9 3,965,575 - ABIE41_RS19210 0.10 -0.8 3,965,575 - ABIE41_RS19210 0.10 -0.6 3,965,575 - ABIE41_RS19210 0.10 -0.0 3,965,930 - +0.1 3,965,997 - -0.3 3,965,997 - -1.2 3,965,997 - -0.1 3,966,006 + -0.5 3,966,007 - -0.6 3,966,045 + -0.2 3,966,045 + +1.2 3,966,045 + -0.9 3,966,046 - +0.5 3,966,046 - +0.6 3,966,046 - -1.8 3,966,046 - -0.4 3,966,046 - +1.7 3,966,046 - -2.9 3,966,285 + ABIE41_RS19215 0.37 -0.5 3,966,286 - ABIE41_RS19215 0.37 -0.7 3,966,557 - ABIE41_RS19215 0.73 +1.2 3,966,657 + ABIE41_RS19215 0.87 -0.9 3,966,658 - ABIE41_RS19215 0.87 -0.6 3,966,658 - ABIE41_RS19215 0.87 -0.6 3,966,658 - ABIE41_RS19215 0.87 -2.3 3,966,676 - ABIE41_RS19215 0.89 -0.2 3,966,859 + +0.5 3,966,860 - -2.1 3,966,897 + -0.3 3,966,898 - +0.5 3,966,898 - +0.3
Or see this region's nucleotide sequence