Strain Fitness in Bosea sp. OAE506 around ABIE41_RS19215

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS19205 and ABIE41_RS19210 are separated by 16 nucleotidesABIE41_RS19210 and ABIE41_RS19215 are separated by 177 nucleotidesABIE41_RS19215 and ABIE41_RS19220 are separated by 160 nucleotidesABIE41_RS19220 and ABIE41_RS19225 are separated by 2 nucleotides ABIE41_RS19205: ABIE41_RS19205 - agmatinase, at 3,964,573 to 3,965,529 _RS19205 ABIE41_RS19210: ABIE41_RS19210 - hypothetical protein, at 3,965,546 to 3,965,827 _RS19210 ABIE41_RS19215: ABIE41_RS19215 - SDR family oxidoreductase, at 3,966,005 to 3,966,757 _RS19215 ABIE41_RS19220: ABIE41_RS19220 - 30S ribosomal protein S9, at 3,966,918 to 3,967,397 _RS19220 ABIE41_RS19225: ABIE41_RS19225 - 50S ribosomal protein L13, at 3,967,400 to 3,967,861 _RS19225 Position (kb) 3966 3967Strain fitness (log2 ratio) -3 -2 -1 0 1at 3965.234 kb on + strand, within ABIE41_RS19205at 3965.235 kb on - strand, within ABIE41_RS19205at 3965.235 kb on - strand, within ABIE41_RS19205at 3965.279 kb on + strand, within ABIE41_RS19205at 3965.450 kb on + strandat 3965.450 kb on + strandat 3965.451 kb on - strandat 3965.451 kb on - strandat 3965.574 kb on + strandat 3965.574 kb on + strandat 3965.574 kb on + strandat 3965.574 kb on + strandat 3965.574 kb on + strandat 3965.575 kb on - strand, within ABIE41_RS19210at 3965.575 kb on - strand, within ABIE41_RS19210at 3965.575 kb on - strand, within ABIE41_RS19210at 3965.575 kb on - strand, within ABIE41_RS19210at 3965.575 kb on - strand, within ABIE41_RS19210at 3965.575 kb on - strand, within ABIE41_RS19210at 3965.930 kb on - strandat 3965.997 kb on - strandat 3965.997 kb on - strandat 3965.997 kb on - strandat 3966.006 kb on + strandat 3966.007 kb on - strandat 3966.045 kb on + strandat 3966.045 kb on + strandat 3966.045 kb on + strandat 3966.046 kb on - strandat 3966.046 kb on - strandat 3966.046 kb on - strandat 3966.046 kb on - strandat 3966.046 kb on - strandat 3966.046 kb on - strandat 3966.285 kb on + strand, within ABIE41_RS19215at 3966.286 kb on - strand, within ABIE41_RS19215at 3966.557 kb on - strand, within ABIE41_RS19215at 3966.657 kb on + strand, within ABIE41_RS19215at 3966.658 kb on - strand, within ABIE41_RS19215at 3966.658 kb on - strand, within ABIE41_RS19215at 3966.658 kb on - strand, within ABIE41_RS19215at 3966.676 kb on - strand, within ABIE41_RS19215at 3966.859 kb on + strandat 3966.860 kb on - strandat 3966.897 kb on + strandat 3966.898 kb on - strandat 3966.898 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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3,965,234 + ABIE41_RS19205 0.69 +0.0
3,965,235 - ABIE41_RS19205 0.69 -0.0
3,965,235 - ABIE41_RS19205 0.69 -1.5
3,965,279 + ABIE41_RS19205 0.74 +0.2
3,965,450 + +0.2
3,965,450 + -1.8
3,965,451 - -1.1
3,965,451 - -0.6
3,965,574 + -0.2
3,965,574 + -0.7
3,965,574 + -0.6
3,965,574 + +0.9
3,965,574 + -0.1
3,965,575 - ABIE41_RS19210 0.10 -0.9
3,965,575 - ABIE41_RS19210 0.10 -1.5
3,965,575 - ABIE41_RS19210 0.10 -0.9
3,965,575 - ABIE41_RS19210 0.10 -0.8
3,965,575 - ABIE41_RS19210 0.10 -0.6
3,965,575 - ABIE41_RS19210 0.10 -0.0
3,965,930 - +0.1
3,965,997 - -0.3
3,965,997 - -1.2
3,965,997 - -0.1
3,966,006 + -0.5
3,966,007 - -0.6
3,966,045 + -0.2
3,966,045 + +1.2
3,966,045 + -0.9
3,966,046 - +0.5
3,966,046 - +0.6
3,966,046 - -1.8
3,966,046 - -0.4
3,966,046 - +1.7
3,966,046 - -2.9
3,966,285 + ABIE41_RS19215 0.37 -0.5
3,966,286 - ABIE41_RS19215 0.37 -0.7
3,966,557 - ABIE41_RS19215 0.73 +1.2
3,966,657 + ABIE41_RS19215 0.87 -0.9
3,966,658 - ABIE41_RS19215 0.87 -0.6
3,966,658 - ABIE41_RS19215 0.87 -0.6
3,966,658 - ABIE41_RS19215 0.87 -2.3
3,966,676 - ABIE41_RS19215 0.89 -0.2
3,966,859 + +0.5
3,966,860 - -2.1
3,966,897 + -0.3
3,966,898 - +0.5
3,966,898 - +0.3

Or see this region's nucleotide sequence