Strain Fitness in Bosea sp. OAE506 around ABIE41_RS16880

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS16865 and ABIE41_RS16870 are separated by 161 nucleotidesABIE41_RS16870 and ABIE41_RS16875 are separated by 13 nucleotidesABIE41_RS16875 and ABIE41_RS16880 are separated by 214 nucleotidesABIE41_RS16880 and ABIE41_RS16885 are separated by 59 nucleotides ABIE41_RS16865: ABIE41_RS16865 - hypothetical protein, at 3,476,601 to 3,476,894 _RS16865 ABIE41_RS16870: ABIE41_RS16870 - hypothetical protein, at 3,477,056 to 3,477,280 _RS16870 ABIE41_RS16875: ABIE41_RS16875 - hypothetical protein, at 3,477,294 to 3,477,509 _RS16875 ABIE41_RS16880: ABIE41_RS16880 - PRC-barrel domain-containing protein, at 3,477,724 to 3,478,305 _RS16880 ABIE41_RS16885: ABIE41_RS16885 - NAD(P)H-hydrate dehydratase, at 3,478,365 to 3,479,870 _RS16885 Position (kb) 3477 3478 3479Strain fitness (log2 ratio) -2 -1 0 1 2at 3476.731 kb on + strand, within ABIE41_RS16865at 3476.841 kb on + strand, within ABIE41_RS16865at 3476.842 kb on - strand, within ABIE41_RS16865at 3476.976 kb on + strandat 3476.976 kb on + strandat 3476.977 kb on - strandat 3477.134 kb on + strand, within ABIE41_RS16870at 3477.135 kb on - strand, within ABIE41_RS16870at 3477.135 kb on - strand, within ABIE41_RS16870at 3477.207 kb on + strand, within ABIE41_RS16870at 3477.208 kb on - strand, within ABIE41_RS16870at 3477.208 kb on - strand, within ABIE41_RS16870at 3477.299 kb on + strandat 3477.299 kb on + strandat 3477.299 kb on + strandat 3477.300 kb on - strandat 3477.300 kb on - strandat 3477.931 kb on + strand, within ABIE41_RS16880at 3477.932 kb on - strand, within ABIE41_RS16880at 3477.932 kb on - strand, within ABIE41_RS16880at 3477.932 kb on - strand, within ABIE41_RS16880at 3477.932 kb on - strand, within ABIE41_RS16880at 3477.932 kb on - strand, within ABIE41_RS16880at 3478.229 kb on - strand, within ABIE41_RS16880at 3478.291 kb on + strandat 3478.292 kb on - strandat 3479.137 kb on + strand, within ABIE41_RS16885at 3479.138 kb on - strand, within ABIE41_RS16885at 3479.141 kb on + strand, within ABIE41_RS16885at 3479.141 kb on + strand, within ABIE41_RS16885at 3479.141 kb on + strand, within ABIE41_RS16885at 3479.141 kb on + strand, within ABIE41_RS16885at 3479.141 kb on + strand, within ABIE41_RS16885at 3479.142 kb on - strand, within ABIE41_RS16885at 3479.142 kb on - strand, within ABIE41_RS16885at 3479.142 kb on - strand, within ABIE41_RS16885at 3479.142 kb on - strand, within ABIE41_RS16885at 3479.142 kb on - strand, within ABIE41_RS16885at 3479.142 kb on - strand, within ABIE41_RS16885at 3479.142 kb on - strand, within ABIE41_RS16885at 3479.142 kb on - strand, within ABIE41_RS16885at 3479.142 kb on - strand, within ABIE41_RS16885at 3479.148 kb on - strand, within ABIE41_RS16885at 3479.226 kb on - strand, within ABIE41_RS16885at 3479.226 kb on - strand, within ABIE41_RS16885

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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3,476,731 + ABIE41_RS16865 0.44 -0.6
3,476,841 + ABIE41_RS16865 0.82 +1.0
3,476,842 - ABIE41_RS16865 0.82 +0.2
3,476,976 + -0.4
3,476,976 + +2.4
3,476,977 - +0.3
3,477,134 + ABIE41_RS16870 0.35 +2.2
3,477,135 - ABIE41_RS16870 0.35 +0.3
3,477,135 - ABIE41_RS16870 0.35 +0.8
3,477,207 + ABIE41_RS16870 0.67 -0.1
3,477,208 - ABIE41_RS16870 0.68 -0.0
3,477,208 - ABIE41_RS16870 0.68 +0.5
3,477,299 + +0.2
3,477,299 + -2.2
3,477,299 + -0.1
3,477,300 - +0.3
3,477,300 - -1.0
3,477,931 + ABIE41_RS16880 0.36 +1.0
3,477,932 - ABIE41_RS16880 0.36 +0.5
3,477,932 - ABIE41_RS16880 0.36 -0.4
3,477,932 - ABIE41_RS16880 0.36 +0.5
3,477,932 - ABIE41_RS16880 0.36 +0.4
3,477,932 - ABIE41_RS16880 0.36 -1.4
3,478,229 - ABIE41_RS16880 0.87 +0.1
3,478,291 + +0.3
3,478,292 - -0.5
3,479,137 + ABIE41_RS16885 0.51 -0.1
3,479,138 - ABIE41_RS16885 0.51 -0.4
3,479,141 + ABIE41_RS16885 0.52 +0.2
3,479,141 + ABIE41_RS16885 0.52 +0.1
3,479,141 + ABIE41_RS16885 0.52 +0.4
3,479,141 + ABIE41_RS16885 0.52 +0.7
3,479,141 + ABIE41_RS16885 0.52 -0.1
3,479,142 - ABIE41_RS16885 0.52 +0.7
3,479,142 - ABIE41_RS16885 0.52 +1.6
3,479,142 - ABIE41_RS16885 0.52 -1.2
3,479,142 - ABIE41_RS16885 0.52 -0.6
3,479,142 - ABIE41_RS16885 0.52 -0.5
3,479,142 - ABIE41_RS16885 0.52 -0.5
3,479,142 - ABIE41_RS16885 0.52 +0.3
3,479,142 - ABIE41_RS16885 0.52 -0.2
3,479,142 - ABIE41_RS16885 0.52 -0.0
3,479,148 - ABIE41_RS16885 0.52 +0.3
3,479,226 - ABIE41_RS16885 0.57 +0.1
3,479,226 - ABIE41_RS16885 0.57 +0.1

Or see this region's nucleotide sequence