Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS28910

Experiment: L-Lysine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS28900 and ABIE40_RS28905 are separated by 5 nucleotidesABIE40_RS28905 and ABIE40_RS28910 are separated by 147 nucleotidesABIE40_RS28910 and ABIE40_RS28915 are separated by 169 nucleotides ABIE40_RS28900: ABIE40_RS28900 - HD domain-containing protein, at 481,765 to 482,187 _RS28900 ABIE40_RS28905: ABIE40_RS28905 - DUF2934 domain-containing protein, at 482,193 to 482,501 _RS28905 ABIE40_RS28910: ABIE40_RS28910 - PAS domain S-box protein, at 482,649 to 483,734 _RS28910 ABIE40_RS28915: ABIE40_RS28915 - ATPase domain-containing protein, at 483,904 to 485,343 _RS28915 Position (kb) 482 483 484Strain fitness (log2 ratio) -2 -1 0 1 2at 481.655 kb on + strandat 481.706 kb on + strandat 481.706 kb on + strandat 481.707 kb on - strandat 481.707 kb on - strandat 481.757 kb on + strandat 481.757 kb on + strandat 481.758 kb on - strandat 481.758 kb on - strandat 481.814 kb on + strand, within ABIE40_RS28900at 481.814 kb on + strand, within ABIE40_RS28900at 481.814 kb on + strand, within ABIE40_RS28900at 481.815 kb on - strand, within ABIE40_RS28900at 482.048 kb on + strand, within ABIE40_RS28900at 482.049 kb on - strand, within ABIE40_RS28900at 482.049 kb on - strand, within ABIE40_RS28900at 482.049 kb on - strand, within ABIE40_RS28900at 482.151 kb on + strandat 482.354 kb on + strand, within ABIE40_RS28905at 482.355 kb on - strand, within ABIE40_RS28905at 482.388 kb on + strand, within ABIE40_RS28905at 482.388 kb on + strand, within ABIE40_RS28905at 482.496 kb on - strandat 482.541 kb on + strandat 482.541 kb on + strandat 482.541 kb on + strandat 482.541 kb on + strandat 482.542 kb on - strandat 482.542 kb on - strandat 482.585 kb on - strandat 482.585 kb on - strandat 482.605 kb on + strandat 482.605 kb on + strandat 482.605 kb on + strandat 482.606 kb on - strandat 482.606 kb on - strandat 482.606 kb on - strandat 482.606 kb on - strandat 482.774 kb on + strand, within ABIE40_RS28910at 482.908 kb on + strand, within ABIE40_RS28910at 482.908 kb on + strand, within ABIE40_RS28910at 482.909 kb on - strand, within ABIE40_RS28910at 482.909 kb on - strand, within ABIE40_RS28910at 482.930 kb on - strand, within ABIE40_RS28910at 482.930 kb on - strand, within ABIE40_RS28910at 482.958 kb on + strand, within ABIE40_RS28910at 482.959 kb on - strand, within ABIE40_RS28910at 482.959 kb on - strand, within ABIE40_RS28910at 483.026 kb on - strand, within ABIE40_RS28910at 483.203 kb on + strand, within ABIE40_RS28910at 483.203 kb on + strand, within ABIE40_RS28910at 483.204 kb on - strand, within ABIE40_RS28910at 483.204 kb on - strand, within ABIE40_RS28910at 483.327 kb on - strand, within ABIE40_RS28910at 483.369 kb on + strand, within ABIE40_RS28910at 483.369 kb on + strand, within ABIE40_RS28910at 483.369 kb on + strand, within ABIE40_RS28910at 483.369 kb on + strand, within ABIE40_RS28910at 483.370 kb on - strand, within ABIE40_RS28910at 483.370 kb on - strand, within ABIE40_RS28910at 483.370 kb on - strand, within ABIE40_RS28910at 483.370 kb on - strand, within ABIE40_RS28910at 483.392 kb on + strand, within ABIE40_RS28910at 483.392 kb on + strand, within ABIE40_RS28910at 483.392 kb on + strand, within ABIE40_RS28910at 483.393 kb on - strand, within ABIE40_RS28910at 483.393 kb on - strand, within ABIE40_RS28910at 483.497 kb on + strand, within ABIE40_RS28910at 483.498 kb on - strand, within ABIE40_RS28910at 483.498 kb on - strand, within ABIE40_RS28910at 483.498 kb on - strand, within ABIE40_RS28910at 483.498 kb on - strand, within ABIE40_RS28910at 483.524 kb on + strand, within ABIE40_RS28910at 483.525 kb on - strand, within ABIE40_RS28910at 483.525 kb on - strand, within ABIE40_RS28910at 483.525 kb on - strand, within ABIE40_RS28910at 483.527 kb on - strand, within ABIE40_RS28910at 483.617 kb on + strand, within ABIE40_RS28910at 483.725 kb on + strandat 483.726 kb on - strandat 483.726 kb on - strandat 483.726 kb on - strandat 483.726 kb on - strandat 483.726 kb on - strandat 483.741 kb on + strandat 483.761 kb on + strandat 483.761 kb on + strandat 483.762 kb on - strandat 483.768 kb on + strandat 483.798 kb on + strandat 483.798 kb on + strandat 483.799 kb on - strandat 483.818 kb on + strandat 483.818 kb on + strandat 483.866 kb on - strandat 483.883 kb on + strandat 483.883 kb on + strandat 483.883 kb on + strandat 483.883 kb on + strandat 483.884 kb on - strandat 483.886 kb on + strandat 483.887 kb on - strandat 483.923 kb on + strandat 483.923 kb on + strandat 483.924 kb on - strandat 483.924 kb on - strandat 483.924 kb on - strandat 483.985 kb on + strandat 483.985 kb on + strandat 483.986 kb on - strandat 483.986 kb on - strandat 483.986 kb on - strandat 483.986 kb on - strandat 483.986 kb on - strandat 483.986 kb on - strandat 483.986 kb on - strandat 483.986 kb on - strandat 484.024 kb on + strandat 484.075 kb on + strand, within ABIE40_RS28915at 484.076 kb on - strand, within ABIE40_RS28915at 484.076 kb on - strand, within ABIE40_RS28915at 484.171 kb on + strand, within ABIE40_RS28915at 484.171 kb on + strand, within ABIE40_RS28915at 484.171 kb on + strand, within ABIE40_RS28915at 484.171 kb on + strand, within ABIE40_RS28915at 484.171 kb on + strand, within ABIE40_RS28915at 484.172 kb on - strand, within ABIE40_RS28915at 484.172 kb on - strand, within ABIE40_RS28915at 484.172 kb on - strand, within ABIE40_RS28915at 484.172 kb on - strand, within ABIE40_RS28915at 484.172 kb on - strand, within ABIE40_RS28915at 484.374 kb on - strand, within ABIE40_RS28915at 484.439 kb on + strand, within ABIE40_RS28915at 484.439 kb on + strand, within ABIE40_RS28915at 484.439 kb on + strand, within ABIE40_RS28915at 484.439 kb on + strand, within ABIE40_RS28915at 484.440 kb on - strand, within ABIE40_RS28915at 484.492 kb on - strand, within ABIE40_RS28915at 484.526 kb on - strand, within ABIE40_RS28915at 484.564 kb on + strand, within ABIE40_RS28915at 484.564 kb on + strand, within ABIE40_RS28915at 484.564 kb on + strand, within ABIE40_RS28915at 484.611 kb on + strand, within ABIE40_RS28915at 484.612 kb on - strand, within ABIE40_RS28915at 484.632 kb on + strand, within ABIE40_RS28915

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lysine (C)
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481,655 + -0.4
481,706 + -0.1
481,706 + -2.0
481,707 - -0.5
481,707 - +2.1
481,757 + +0.6
481,757 + +0.5
481,758 - +0.3
481,758 - -0.2
481,814 + ABIE40_RS28900 0.12 -0.2
481,814 + ABIE40_RS28900 0.12 -0.9
481,814 + ABIE40_RS28900 0.12 -1.7
481,815 - ABIE40_RS28900 0.12 +0.2
482,048 + ABIE40_RS28900 0.67 -1.0
482,049 - ABIE40_RS28900 0.67 -0.4
482,049 - ABIE40_RS28900 0.67 -0.3
482,049 - ABIE40_RS28900 0.67 +0.2
482,151 + -1.6
482,354 + ABIE40_RS28905 0.52 -0.1
482,355 - ABIE40_RS28905 0.52 -0.5
482,388 + ABIE40_RS28905 0.63 +0.1
482,388 + ABIE40_RS28905 0.63 +0.1
482,496 - +1.0
482,541 + -1.4
482,541 + -0.1
482,541 + +0.4
482,541 + -0.3
482,542 - +0.1
482,542 - -0.3
482,585 - +2.5
482,585 - -0.2
482,605 + -0.3
482,605 + +1.1
482,605 + -0.2
482,606 - -0.5
482,606 - +0.2
482,606 - -0.9
482,606 - -2.0
482,774 + ABIE40_RS28910 0.12 -1.2
482,908 + ABIE40_RS28910 0.24 +0.8
482,908 + ABIE40_RS28910 0.24 +0.3
482,909 - ABIE40_RS28910 0.24 +0.2
482,909 - ABIE40_RS28910 0.24 +0.0
482,930 - ABIE40_RS28910 0.26 -0.8
482,930 - ABIE40_RS28910 0.26 +0.1
482,958 + ABIE40_RS28910 0.28 +0.5
482,959 - ABIE40_RS28910 0.29 -0.4
482,959 - ABIE40_RS28910 0.29 -1.2
483,026 - ABIE40_RS28910 0.35 +0.7
483,203 + ABIE40_RS28910 0.51 -2.3
483,203 + ABIE40_RS28910 0.51 -0.6
483,204 - ABIE40_RS28910 0.51 -1.0
483,204 - ABIE40_RS28910 0.51 +0.6
483,327 - ABIE40_RS28910 0.62 +0.4
483,369 + ABIE40_RS28910 0.66 +0.4
483,369 + ABIE40_RS28910 0.66 +0.6
483,369 + ABIE40_RS28910 0.66 +0.2
483,369 + ABIE40_RS28910 0.66 -1.8
483,370 - ABIE40_RS28910 0.66 -0.2
483,370 - ABIE40_RS28910 0.66 -0.1
483,370 - ABIE40_RS28910 0.66 -0.1
483,370 - ABIE40_RS28910 0.66 +1.8
483,392 + ABIE40_RS28910 0.68 +0.4
483,392 + ABIE40_RS28910 0.68 +2.1
483,392 + ABIE40_RS28910 0.68 +0.4
483,393 - ABIE40_RS28910 0.69 -1.4
483,393 - ABIE40_RS28910 0.69 +1.2
483,497 + ABIE40_RS28910 0.78 -0.4
483,498 - ABIE40_RS28910 0.78 +0.3
483,498 - ABIE40_RS28910 0.78 -0.2
483,498 - ABIE40_RS28910 0.78 +0.4
483,498 - ABIE40_RS28910 0.78 +1.4
483,524 + ABIE40_RS28910 0.81 -0.6
483,525 - ABIE40_RS28910 0.81 -0.1
483,525 - ABIE40_RS28910 0.81 +0.1
483,525 - ABIE40_RS28910 0.81 -0.0
483,527 - ABIE40_RS28910 0.81 -0.1
483,617 + ABIE40_RS28910 0.89 +0.9
483,725 + +0.4
483,726 - +0.2
483,726 - -0.6
483,726 - +1.1
483,726 - +2.1
483,726 - +0.8
483,741 + +1.0
483,761 + -0.4
483,761 + -0.8
483,762 - -0.0
483,768 + -0.1
483,798 + -1.6
483,798 + +1.0
483,799 - -0.2
483,818 + -0.4
483,818 + -0.4
483,866 - -0.1
483,883 + -1.0
483,883 + -0.7
483,883 + +1.4
483,883 + +1.1
483,884 - -0.9
483,886 + -0.0
483,887 - +0.2
483,923 + +2.5
483,923 + -1.3
483,924 - +0.8
483,924 - -0.7
483,924 - -0.2
483,985 + +0.4
483,985 + -1.1
483,986 - +0.6
483,986 - +0.8
483,986 - -1.0
483,986 - +0.2
483,986 - +0.5
483,986 - +0.3
483,986 - +0.4
483,986 - +0.0
484,024 + -1.3
484,075 + ABIE40_RS28915 0.12 -0.4
484,076 - ABIE40_RS28915 0.12 -1.1
484,076 - ABIE40_RS28915 0.12 +0.8
484,171 + ABIE40_RS28915 0.19 -0.9
484,171 + ABIE40_RS28915 0.19 +0.3
484,171 + ABIE40_RS28915 0.19 +0.6
484,171 + ABIE40_RS28915 0.19 -0.5
484,171 + ABIE40_RS28915 0.19 -1.0
484,172 - ABIE40_RS28915 0.19 +0.1
484,172 - ABIE40_RS28915 0.19 +0.1
484,172 - ABIE40_RS28915 0.19 -1.9
484,172 - ABIE40_RS28915 0.19 -0.7
484,172 - ABIE40_RS28915 0.19 -0.9
484,374 - ABIE40_RS28915 0.33 -1.2
484,439 + ABIE40_RS28915 0.37 +0.5
484,439 + ABIE40_RS28915 0.37 +0.2
484,439 + ABIE40_RS28915 0.37 -1.0
484,439 + ABIE40_RS28915 0.37 -1.5
484,440 - ABIE40_RS28915 0.37 +0.1
484,492 - ABIE40_RS28915 0.41 -1.0
484,526 - ABIE40_RS28915 0.43 -0.8
484,564 + ABIE40_RS28915 0.46 +1.2
484,564 + ABIE40_RS28915 0.46 +1.5
484,564 + ABIE40_RS28915 0.46 -0.8
484,611 + ABIE40_RS28915 0.49 +0.1
484,612 - ABIE40_RS28915 0.49 +0.4
484,632 + ABIE40_RS28915 0.51 -2.0

Or see this region's nucleotide sequence