Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS26345

Experiment: L-Lysine (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Lysine (C)
1,449,968	+		ABIE40_RS26340	0.65	-1.9
1,450,099	+		ABIE40_RS26340	0.72	-4.9
1,450,099	+		ABIE40_RS26340	0.72	-1.7
1,450,101	+		ABIE40_RS26340	0.72	-1.3
1,450,101	+		ABIE40_RS26340	0.72	-4.7
1,450,102	-		ABIE40_RS26340	0.72	-0.5
1,450,102	-		ABIE40_RS26340	0.72	-2.7
1,450,176	+		ABIE40_RS26340	0.76	-2.6
1,450,176	+		ABIE40_RS26340	0.76	-0.7
1,450,177	-		ABIE40_RS26340	0.76	+0.8
1,450,177	-		ABIE40_RS26340	0.76	-2.0
1,450,266	+		ABIE40_RS26340	0.81	-1.3
1,450,266	+		ABIE40_RS26340	0.81	-2.5
1,450,266	+		ABIE40_RS26340	0.81	-1.4
1,450,266	+		ABIE40_RS26340	0.81	-1.9
1,450,266	+		ABIE40_RS26340	0.81	-3.1
1,450,266	+		ABIE40_RS26340	0.81	-2.0
1,450,266	+		ABIE40_RS26340	0.81	-2.1
1,450,266	+		ABIE40_RS26340	0.81	-2.9
1,450,266	+		ABIE40_RS26340	0.81	-1.4
1,450,266	+		ABIE40_RS26340	0.81	-1.9
1,450,267	-		ABIE40_RS26340	0.81	-2.8
1,450,267	-		ABIE40_RS26340	0.81	-0.7
1,450,267	-		ABIE40_RS26340	0.81	-1.3
1,450,267	-		ABIE40_RS26340	0.81	-3.2
1,450,267	-		ABIE40_RS26340	0.81	-1.2
1,450,267	-		ABIE40_RS26340	0.81	+1.8
1,450,267	-		ABIE40_RS26340	0.81	-2.7
1,450,267	-		ABIE40_RS26340	0.81	-2.4
1,450,267	-		ABIE40_RS26340	0.81	-1.9
1,450,267	-		ABIE40_RS26340	0.81	-1.4
1,450,494	+				-3.2
1,450,495	-				-1.2
1,450,495	-				-2.6
1,450,495	-				-3.6
1,450,495	-				-0.5
1,450,889	-				-3.1
1,450,900	+				-2.6
1,450,900	+				-1.9
1,450,900	+				-2.2
1,450,900	+				-1.9
1,450,900	+				-1.7
1,450,900	+				-1.6
1,450,900	+				-2.4
1,450,901	-				-1.6
1,450,901	-				-2.4
1,450,901	-				-2.2
1,450,904	+				-4.1
1,450,904	+				-2.4
1,450,904	+				-0.4
1,450,904	+				-3.4
1,450,904	+				-2.4
1,450,904	+				+1.8
1,450,905	-				-1.7
1,450,905	-				-1.6
1,450,905	-				-3.2
1,450,905	-				-2.3
1,450,905	-				+0.4
1,450,951	+				-3.7
1,450,976	-		ABIE40_RS26345	0.10	-1.1
1,450,995	+		ABIE40_RS26345	0.12	-2.0
1,450,996	-		ABIE40_RS26345	0.12	-2.8
1,451,111	-		ABIE40_RS26345	0.20	-2.6
1,451,111	-		ABIE40_RS26345	0.20	-0.2
1,451,190	+		ABIE40_RS26345	0.26	-2.6
1,451,190	+		ABIE40_RS26345	0.26	-1.7
1,451,190	+		ABIE40_RS26345	0.26	-1.0
1,451,190	+		ABIE40_RS26345	0.26	-1.5
1,451,190	+		ABIE40_RS26345	0.26	+0.2
1,451,191	-		ABIE40_RS26345	0.26	-1.5
1,451,191	-		ABIE40_RS26345	0.26	-2.8
1,451,230	+		ABIE40_RS26345	0.29	-1.3
1,451,230	+		ABIE40_RS26345	0.29	-3.3
1,451,230	+		ABIE40_RS26345	0.29	-3.0
1,451,503	+		ABIE40_RS26345	0.50	-2.9
1,451,503	+		ABIE40_RS26345	0.50	+1.5
1,451,503	+		ABIE40_RS26345	0.50	-3.9
1,451,503	+		ABIE40_RS26345	0.50	-1.0
1,451,504	-		ABIE40_RS26345	0.50	-4.1
1,451,504	-		ABIE40_RS26345	0.50	-1.7
1,451,504	-		ABIE40_RS26345	0.50	-1.1
1,451,551	+		ABIE40_RS26345	0.54	-2.4
1,451,551	+		ABIE40_RS26345	0.54	-1.9
1,451,551	+		ABIE40_RS26345	0.54	-2.6
1,451,551	+		ABIE40_RS26345	0.54	-2.8
1,451,551	+		ABIE40_RS26345	0.54	-3.1
1,451,551	+		ABIE40_RS26345	0.54	+0.8
1,451,551	+		ABIE40_RS26345	0.54	-1.7
1,451,551	+		ABIE40_RS26345	0.54	-1.0
1,451,551	+		ABIE40_RS26345	0.54	-3.8
1,451,551	+		ABIE40_RS26345	0.54	-3.0
1,451,551	+		ABIE40_RS26345	0.54	-0.7
1,451,552	-		ABIE40_RS26345	0.54	-2.6
1,451,552	-		ABIE40_RS26345	0.54	-1.3
1,451,552	-		ABIE40_RS26345	0.54	-4.4
1,451,552	-		ABIE40_RS26345	0.54	-4.0
1,451,552	-		ABIE40_RS26345	0.54	-2.0
1,451,602	+		ABIE40_RS26345	0.57	-1.2
1,451,602	+		ABIE40_RS26345	0.57	-3.2
1,451,602	+		ABIE40_RS26345	0.57	-1.9
1,451,603	-		ABIE40_RS26345	0.58	-3.0
1,451,603	-		ABIE40_RS26345	0.58	-2.3
1,451,603	-		ABIE40_RS26345	0.58	-2.2
1,451,604	+		ABIE40_RS26345	0.58	-1.3
1,451,604	+		ABIE40_RS26345	0.58	-1.7
1,451,605	-		ABIE40_RS26345	0.58	-0.2
1,451,636	-		ABIE40_RS26345	0.60	-1.6
1,451,636	-		ABIE40_RS26345	0.60	-0.4
1,451,785	-		ABIE40_RS26345	0.71	-2.1
1,451,794	+		ABIE40_RS26345	0.72	-1.6
1,451,794	+		ABIE40_RS26345	0.72	-1.2
1,451,794	+		ABIE40_RS26345	0.72	-1.6
1,451,794	+		ABIE40_RS26345	0.72	-1.5
1,451,795	-		ABIE40_RS26345	0.72	-1.7
1,451,795	-		ABIE40_RS26345	0.72	-4.6
1,451,795	-		ABIE40_RS26345	0.72	-2.4
1,451,795	-		ABIE40_RS26345	0.72	-2.1
1,451,795	-		ABIE40_RS26345	0.72	-0.5
1,451,795	-		ABIE40_RS26345	0.72	-2.9
1,451,795	-		ABIE40_RS26345	0.72	-3.7
1,451,795	-		ABIE40_RS26345	0.72	-4.6
1,451,795	-		ABIE40_RS26345	0.72	-3.0
1,451,795	-		ABIE40_RS26345	0.72	-1.1
1,451,795	-		ABIE40_RS26345	0.72	-3.5
1,452,125	+				-0.0
1,452,125	+				+0.0
1,452,126	-				-2.0
1,452,163	+				+1.3
1,452,163	+				+0.4
1,452,163	+				+0.1
1,452,163	+				+0.6
1,452,164	-				-0.0
1,452,164	-				+1.1
1,452,164	-				-0.6
1,452,238	-				+0.6
1,452,291	+				-0.5
1,452,291	+				-0.6
1,452,291	+				+0.5
1,452,291	+				-1.9
1,452,291	+				+0.1
1,452,292	-				-0.9
1,452,292	-				+1.6
1,452,292	-				+0.1
1,452,292	-				-0.2
1,452,292	-				+1.8
1,452,292	-				+0.9
1,452,292	-				+0.8
1,452,410	+		ABIE40_RS26350	0.28	-0.8
1,452,411	-		ABIE40_RS26350	0.29	-0.6
1,452,531	+		ABIE40_RS26350	0.48	-0.1
1,452,531	+		ABIE40_RS26350	0.48	+2.3
1,452,532	-		ABIE40_RS26350	0.48	-0.7
1,452,675	+		ABIE40_RS26350	0.72	-1.0
1,452,698	+		ABIE40_RS26350	0.75	-0.4
1,452,742	-		ABIE40_RS26350	0.83	-0.5
1,452,742	-		ABIE40_RS26350	0.83	+0.3
1,452,742	-		ABIE40_RS26350	0.83	+0.1
1,452,860	+				-0.5
1,452,860	+				+0.0
1,452,860	+				-0.2
1,452,860	+				-0.2
1,452,861	-				-0.1
1,452,861	-				-0.6
1,453,088	+		ABIE40_RS26355	0.46	-0.1
1,453,088	+		ABIE40_RS26355	0.46	-0.1
1,453,089	-		ABIE40_RS26355	0.46	-0.8
1,453,089	-		ABIE40_RS26355	0.46	-0.5
1,453,165	+		ABIE40_RS26355	0.71	-0.8