Experiment: L-Lysine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS23235 and ABIE40_RS23240 are separated by 17 nucleotides ABIE40_RS23240 and ABIE40_RS23245 are separated by 150 nucleotides ABIE40_RS23245 and ABIE40_RS23250 are separated by 93 nucleotides
ABIE40_RS23235: ABIE40_RS23235 - MmgE/PrpD family protein, at 795,500 to 796,933
_RS23235
ABIE40_RS23240: ABIE40_RS23240 - FCD domain-containing protein, at 796,951 to 797,622
_RS23240
ABIE40_RS23245: ABIE40_RS23245 - YigZ family protein, at 797,773 to 798,411
_RS23245
ABIE40_RS23250: ABIE40_RS23250 - hypothetical protein, at 798,505 to 799,401
_RS23250
Position (kb) 796
797
798 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 796.081 kb on + strand, within ABIE40_RS23235 at 796.082 kb on - strand, within ABIE40_RS23235 at 796.357 kb on + strand, within ABIE40_RS23235 at 796.358 kb on - strand, within ABIE40_RS23235 at 796.611 kb on + strand, within ABIE40_RS23235 at 796.611 kb on + strand, within ABIE40_RS23235 at 796.777 kb on + strand, within ABIE40_RS23235 at 796.809 kb on + strand at 796.809 kb on + strand at 796.810 kb on - strand at 796.875 kb on + strand at 796.875 kb on + strand at 796.875 kb on + strand at 796.876 kb on - strand at 796.922 kb on + strand at 796.922 kb on + strand at 796.922 kb on + strand at 796.940 kb on + strand at 796.941 kb on - strand at 796.941 kb on - strand at 796.941 kb on - strand at 796.941 kb on - strand at 796.948 kb on + strand at 796.952 kb on + strand at 796.952 kb on + strand at 796.952 kb on + strand at 796.952 kb on + strand at 796.952 kb on + strand at 796.952 kb on + strand at 796.953 kb on - strand at 796.953 kb on - strand at 796.953 kb on - strand at 796.953 kb on - strand at 796.953 kb on - strand at 796.953 kb on - strand at 796.956 kb on + strand at 796.956 kb on + strand at 796.956 kb on + strand at 797.010 kb on + strand at 797.010 kb on + strand at 797.010 kb on + strand at 797.011 kb on - strand at 797.011 kb on - strand at 797.011 kb on - strand at 797.153 kb on + strand, within ABIE40_RS23240 at 797.153 kb on + strand, within ABIE40_RS23240 at 797.154 kb on - strand, within ABIE40_RS23240 at 797.154 kb on - strand, within ABIE40_RS23240 at 797.154 kb on - strand, within ABIE40_RS23240 at 797.225 kb on + strand, within ABIE40_RS23240 at 797.225 kb on + strand, within ABIE40_RS23240 at 797.225 kb on + strand, within ABIE40_RS23240 at 797.226 kb on - strand, within ABIE40_RS23240 at 797.226 kb on - strand, within ABIE40_RS23240 at 797.226 kb on - strand, within ABIE40_RS23240 at 797.226 kb on - strand, within ABIE40_RS23240 at 797.226 kb on - strand, within ABIE40_RS23240 at 797.226 kb on - strand, within ABIE40_RS23240 at 797.226 kb on - strand, within ABIE40_RS23240 at 797.360 kb on + strand, within ABIE40_RS23240 at 797.360 kb on + strand, within ABIE40_RS23240 at 797.361 kb on - strand, within ABIE40_RS23240 at 797.361 kb on - strand, within ABIE40_RS23240 at 797.361 kb on - strand, within ABIE40_RS23240 at 797.745 kb on + strand at 797.746 kb on - strand at 797.746 kb on - strand at 797.746 kb on - strand at 797.746 kb on - strand at 797.746 kb on - strand at 797.746 kb on - strand at 797.746 kb on - strand at 797.746 kb on - strand at 797.746 kb on - strand at 797.938 kb on + strand, within ABIE40_RS23245 at 797.938 kb on + strand, within ABIE40_RS23245 at 797.938 kb on + strand, within ABIE40_RS23245 at 797.939 kb on - strand, within ABIE40_RS23245 at 797.939 kb on - strand, within ABIE40_RS23245 at 797.939 kb on - strand, within ABIE40_RS23245 at 797.939 kb on - strand, within ABIE40_RS23245 at 798.142 kb on + strand, within ABIE40_RS23245 at 798.142 kb on + strand, within ABIE40_RS23245 at 798.142 kb on + strand, within ABIE40_RS23245 at 798.142 kb on + strand, within ABIE40_RS23245 at 798.142 kb on + strand, within ABIE40_RS23245 at 798.142 kb on + strand, within ABIE40_RS23245 at 798.142 kb on + strand, within ABIE40_RS23245 at 798.143 kb on - strand, within ABIE40_RS23245 at 798.143 kb on - strand, within ABIE40_RS23245 at 798.143 kb on - strand, within ABIE40_RS23245 at 798.143 kb on - strand, within ABIE40_RS23245 at 798.143 kb on - strand, within ABIE40_RS23245 at 798.143 kb on - strand, within ABIE40_RS23245 at 798.203 kb on + strand, within ABIE40_RS23245 at 798.203 kb on + strand, within ABIE40_RS23245 at 798.204 kb on - strand, within ABIE40_RS23245 at 798.204 kb on - strand, within ABIE40_RS23245 at 798.204 kb on - strand, within ABIE40_RS23245 at 798.204 kb on - strand, within ABIE40_RS23245 at 798.227 kb on + strand, within ABIE40_RS23245 at 798.227 kb on + strand, within ABIE40_RS23245 at 798.228 kb on - strand, within ABIE40_RS23245 at 798.228 kb on - strand, within ABIE40_RS23245 at 798.228 kb on - strand, within ABIE40_RS23245 at 798.228 kb on - strand, within ABIE40_RS23245 at 798.277 kb on + strand, within ABIE40_RS23245 at 798.411 kb on + strand at 798.487 kb on + strand at 798.488 kb on - strand at 798.576 kb on + strand at 798.577 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lysine (C) remove 796,081 + ABIE40_RS23235 0.41 -1.2 796,082 - ABIE40_RS23235 0.41 +0.3 796,357 + ABIE40_RS23235 0.60 -0.9 796,358 - ABIE40_RS23235 0.60 +0.4 796,611 + ABIE40_RS23235 0.77 -0.4 796,611 + ABIE40_RS23235 0.77 -0.4 796,777 + ABIE40_RS23235 0.89 +0.8 796,809 + +0.8 796,809 + -0.4 796,810 - -0.2 796,875 + +0.3 796,875 + -0.2 796,875 + -0.3 796,876 - -0.4 796,922 + +0.8 796,922 + -0.5 796,922 + +0.7 796,940 + -3.0 796,941 - +0.6 796,941 - -0.4 796,941 - +1.9 796,941 - -0.8 796,948 + -2.2 796,952 + -0.4 796,952 + -0.2 796,952 + -0.3 796,952 + +0.4 796,952 + +1.3 796,952 + -0.2 796,953 - +0.5 796,953 - -1.0 796,953 - +0.2 796,953 - -0.5 796,953 - -0.2 796,953 - -0.3 796,956 + -1.7 796,956 + +0.2 796,956 + +0.1 797,010 + +1.4 797,010 + +0.1 797,010 + +0.6 797,011 - -1.0 797,011 - +0.0 797,011 - -0.6 797,153 + ABIE40_RS23240 0.30 +1.2 797,153 + ABIE40_RS23240 0.30 +0.5 797,154 - ABIE40_RS23240 0.30 +0.8 797,154 - ABIE40_RS23240 0.30 -0.7 797,154 - ABIE40_RS23240 0.30 -0.7 797,225 + ABIE40_RS23240 0.41 +0.2 797,225 + ABIE40_RS23240 0.41 -0.4 797,225 + ABIE40_RS23240 0.41 +0.2 797,226 - ABIE40_RS23240 0.41 -0.4 797,226 - ABIE40_RS23240 0.41 -0.4 797,226 - ABIE40_RS23240 0.41 +1.1 797,226 - ABIE40_RS23240 0.41 -1.4 797,226 - ABIE40_RS23240 0.41 +0.0 797,226 - ABIE40_RS23240 0.41 +1.0 797,226 - ABIE40_RS23240 0.41 -0.2 797,360 + ABIE40_RS23240 0.61 +0.3 797,360 + ABIE40_RS23240 0.61 +0.8 797,361 - ABIE40_RS23240 0.61 -0.7 797,361 - ABIE40_RS23240 0.61 +0.4 797,361 - ABIE40_RS23240 0.61 -1.0 797,745 + -0.6 797,746 - +0.0 797,746 - +0.3 797,746 - -1.5 797,746 - -0.2 797,746 - -0.9 797,746 - -2.6 797,746 - -2.1 797,746 - +0.8 797,746 - -0.9 797,938 + ABIE40_RS23245 0.26 +0.5 797,938 + ABIE40_RS23245 0.26 -1.7 797,938 + ABIE40_RS23245 0.26 -0.7 797,939 - ABIE40_RS23245 0.26 -1.4 797,939 - ABIE40_RS23245 0.26 +0.5 797,939 - ABIE40_RS23245 0.26 -1.0 797,939 - ABIE40_RS23245 0.26 +0.3 798,142 + ABIE40_RS23245 0.58 +0.3 798,142 + ABIE40_RS23245 0.58 +1.6 798,142 + ABIE40_RS23245 0.58 -0.4 798,142 + ABIE40_RS23245 0.58 -1.3 798,142 + ABIE40_RS23245 0.58 -1.4 798,142 + ABIE40_RS23245 0.58 +0.1 798,142 + ABIE40_RS23245 0.58 -1.4 798,143 - ABIE40_RS23245 0.58 +1.4 798,143 - ABIE40_RS23245 0.58 -0.5 798,143 - ABIE40_RS23245 0.58 -1.0 798,143 - ABIE40_RS23245 0.58 -0.8 798,143 - ABIE40_RS23245 0.58 +0.1 798,143 - ABIE40_RS23245 0.58 +0.3 798,203 + ABIE40_RS23245 0.67 +0.5 798,203 + ABIE40_RS23245 0.67 +0.4 798,204 - ABIE40_RS23245 0.67 +0.1 798,204 - ABIE40_RS23245 0.67 -0.0 798,204 - ABIE40_RS23245 0.67 +0.2 798,204 - ABIE40_RS23245 0.67 -1.0 798,227 + ABIE40_RS23245 0.71 +0.2 798,227 + ABIE40_RS23245 0.71 +0.6 798,228 - ABIE40_RS23245 0.71 +1.5 798,228 - ABIE40_RS23245 0.71 -0.5 798,228 - ABIE40_RS23245 0.71 -3.1 798,228 - ABIE40_RS23245 0.71 -0.8 798,277 + ABIE40_RS23245 0.79 +1.1 798,411 + +0.0 798,487 + -1.5 798,488 - +0.3 798,576 + -1.5 798,577 - +0.4
Or see this region's nucleotide sequence