Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS19835

Experiment: L-Lysine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS19825 and ABIE40_RS19830 overlap by 4 nucleotidesABIE40_RS19830 and ABIE40_RS19835 are separated by 40 nucleotidesABIE40_RS19835 and ABIE40_RS19840 are separated by 0 nucleotides ABIE40_RS19825: ABIE40_RS19825 - cytochrome o ubiquinol oxidase subunit III, at 66,336 to 66,956 _RS19825 ABIE40_RS19830: ABIE40_RS19830 - cytochrome o ubiquinol oxidase subunit IV, at 66,953 to 67,360 _RS19830 ABIE40_RS19835: ABIE40_RS19835 - SURF1 family protein, at 67,401 to 68,141 _RS19835 ABIE40_RS19840: ABIE40_RS19840 - FAD/NAD(P)-binding protein, at 68,142 to 69,549 _RS19840 Position (kb) 67 68 69Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 66.432 kb on + strand, within ABIE40_RS19825at 66.477 kb on + strand, within ABIE40_RS19825at 66.477 kb on + strand, within ABIE40_RS19825at 66.478 kb on - strand, within ABIE40_RS19825at 66.478 kb on - strand, within ABIE40_RS19825at 66.478 kb on - strand, within ABIE40_RS19825at 66.478 kb on - strand, within ABIE40_RS19825at 66.498 kb on + strand, within ABIE40_RS19825at 66.498 kb on + strand, within ABIE40_RS19825at 66.498 kb on + strand, within ABIE40_RS19825at 66.498 kb on + strand, within ABIE40_RS19825at 66.498 kb on + strand, within ABIE40_RS19825at 66.499 kb on - strand, within ABIE40_RS19825at 66.499 kb on - strand, within ABIE40_RS19825at 66.499 kb on - strand, within ABIE40_RS19825at 66.499 kb on - strand, within ABIE40_RS19825at 66.585 kb on + strand, within ABIE40_RS19825at 66.618 kb on + strand, within ABIE40_RS19825at 66.619 kb on - strand, within ABIE40_RS19825at 66.619 kb on - strand, within ABIE40_RS19825at 66.691 kb on - strand, within ABIE40_RS19825at 66.691 kb on - strand, within ABIE40_RS19825at 66.691 kb on - strand, within ABIE40_RS19825at 66.691 kb on - strand, within ABIE40_RS19825at 66.691 kb on - strand, within ABIE40_RS19825at 66.933 kb on + strandat 66.933 kb on + strandat 66.934 kb on - strandat 66.934 kb on - strandat 67.052 kb on + strand, within ABIE40_RS19830at 67.053 kb on - strand, within ABIE40_RS19830at 67.053 kb on - strand, within ABIE40_RS19830at 67.053 kb on - strand, within ABIE40_RS19830at 67.053 kb on - strand, within ABIE40_RS19830at 67.053 kb on - strand, within ABIE40_RS19830at 67.193 kb on + strand, within ABIE40_RS19830at 67.193 kb on + strand, within ABIE40_RS19830at 67.193 kb on + strand, within ABIE40_RS19830at 67.193 kb on + strand, within ABIE40_RS19830at 67.193 kb on + strand, within ABIE40_RS19830at 67.194 kb on - strand, within ABIE40_RS19830at 67.194 kb on - strand, within ABIE40_RS19830at 67.194 kb on - strand, within ABIE40_RS19830at 67.194 kb on - strand, within ABIE40_RS19830at 67.285 kb on + strand, within ABIE40_RS19830at 67.411 kb on + strandat 67.498 kb on + strand, within ABIE40_RS19835at 67.498 kb on + strand, within ABIE40_RS19835at 67.530 kb on + strand, within ABIE40_RS19835at 67.629 kb on + strand, within ABIE40_RS19835at 67.629 kb on + strand, within ABIE40_RS19835at 67.630 kb on - strand, within ABIE40_RS19835at 67.683 kb on + strand, within ABIE40_RS19835at 67.684 kb on - strand, within ABIE40_RS19835at 67.684 kb on - strand, within ABIE40_RS19835at 67.685 kb on + strand, within ABIE40_RS19835at 67.685 kb on + strand, within ABIE40_RS19835at 67.685 kb on + strand, within ABIE40_RS19835at 67.685 kb on + strand, within ABIE40_RS19835at 67.685 kb on + strand, within ABIE40_RS19835at 67.685 kb on + strand, within ABIE40_RS19835at 67.686 kb on - strand, within ABIE40_RS19835at 67.686 kb on - strand, within ABIE40_RS19835at 67.686 kb on - strand, within ABIE40_RS19835at 67.775 kb on - strand, within ABIE40_RS19835at 67.775 kb on - strand, within ABIE40_RS19835at 67.968 kb on + strand, within ABIE40_RS19835at 68.140 kb on - strandat 68.140 kb on - strandat 68.197 kb on + strandat 68.197 kb on + strandat 68.197 kb on + strandat 68.197 kb on + strandat 68.198 kb on - strandat 68.198 kb on - strandat 68.198 kb on - strandat 68.231 kb on + strandat 68.232 kb on - strandat 68.232 kb on - strandat 68.302 kb on + strand, within ABIE40_RS19840at 68.529 kb on + strand, within ABIE40_RS19840at 68.530 kb on - strand, within ABIE40_RS19840at 68.564 kb on + strand, within ABIE40_RS19840at 68.564 kb on + strand, within ABIE40_RS19840at 68.564 kb on + strand, within ABIE40_RS19840at 68.564 kb on + strand, within ABIE40_RS19840at 68.564 kb on + strand, within ABIE40_RS19840at 68.564 kb on + strand, within ABIE40_RS19840at 68.564 kb on + strand, within ABIE40_RS19840at 68.564 kb on + strand, within ABIE40_RS19840at 68.564 kb on + strand, within ABIE40_RS19840at 68.564 kb on + strand, within ABIE40_RS19840at 68.565 kb on - strand, within ABIE40_RS19840at 68.565 kb on - strand, within ABIE40_RS19840at 68.565 kb on - strand, within ABIE40_RS19840at 68.565 kb on - strand, within ABIE40_RS19840at 68.565 kb on - strand, within ABIE40_RS19840at 68.565 kb on - strand, within ABIE40_RS19840at 68.565 kb on - strand, within ABIE40_RS19840at 68.600 kb on + strand, within ABIE40_RS19840at 68.600 kb on + strand, within ABIE40_RS19840at 68.601 kb on - strand, within ABIE40_RS19840at 68.601 kb on - strand, within ABIE40_RS19840at 68.601 kb on - strand, within ABIE40_RS19840at 68.601 kb on - strand, within ABIE40_RS19840at 68.601 kb on - strand, within ABIE40_RS19840at 68.601 kb on - strand, within ABIE40_RS19840at 68.601 kb on - strand, within ABIE40_RS19840at 68.601 kb on - strand, within ABIE40_RS19840at 68.601 kb on - strand, within ABIE40_RS19840at 68.818 kb on - strand, within ABIE40_RS19840at 68.890 kb on + strand, within ABIE40_RS19840at 68.890 kb on + strand, within ABIE40_RS19840at 68.890 kb on + strand, within ABIE40_RS19840at 68.891 kb on - strand, within ABIE40_RS19840at 68.934 kb on + strand, within ABIE40_RS19840at 69.033 kb on + strand, within ABIE40_RS19840

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lysine (C)
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66,432 + ABIE40_RS19825 0.15 +0.3
66,477 + ABIE40_RS19825 0.23 -0.4
66,477 + ABIE40_RS19825 0.23 +1.3
66,478 - ABIE40_RS19825 0.23 +0.2
66,478 - ABIE40_RS19825 0.23 +1.1
66,478 - ABIE40_RS19825 0.23 -0.1
66,478 - ABIE40_RS19825 0.23 -0.1
66,498 + ABIE40_RS19825 0.26 +0.9
66,498 + ABIE40_RS19825 0.26 +0.2
66,498 + ABIE40_RS19825 0.26 +0.8
66,498 + ABIE40_RS19825 0.26 -0.5
66,498 + ABIE40_RS19825 0.26 +0.9
66,499 - ABIE40_RS19825 0.26 +1.6
66,499 - ABIE40_RS19825 0.26 +1.0
66,499 - ABIE40_RS19825 0.26 +1.8
66,499 - ABIE40_RS19825 0.26 -0.4
66,585 + ABIE40_RS19825 0.40 +0.5
66,618 + ABIE40_RS19825 0.45 +0.1
66,619 - ABIE40_RS19825 0.46 +0.3
66,619 - ABIE40_RS19825 0.46 +0.9
66,691 - ABIE40_RS19825 0.57 +1.9
66,691 - ABIE40_RS19825 0.57 +1.6
66,691 - ABIE40_RS19825 0.57 +1.5
66,691 - ABIE40_RS19825 0.57 -1.4
66,691 - ABIE40_RS19825 0.57 -0.5
66,933 + +0.1
66,933 + -0.7
66,934 - -0.3
66,934 - +0.7
67,052 + ABIE40_RS19830 0.24 -2.2
67,053 - ABIE40_RS19830 0.25 +0.2
67,053 - ABIE40_RS19830 0.25 +1.3
67,053 - ABIE40_RS19830 0.25 +1.1
67,053 - ABIE40_RS19830 0.25 -0.4
67,053 - ABIE40_RS19830 0.25 +2.3
67,193 + ABIE40_RS19830 0.59 -0.1
67,193 + ABIE40_RS19830 0.59 -0.4
67,193 + ABIE40_RS19830 0.59 +0.2
67,193 + ABIE40_RS19830 0.59 -0.8
67,193 + ABIE40_RS19830 0.59 +0.0
67,194 - ABIE40_RS19830 0.59 +0.2
67,194 - ABIE40_RS19830 0.59 +0.4
67,194 - ABIE40_RS19830 0.59 -2.3
67,194 - ABIE40_RS19830 0.59 +0.2
67,285 + ABIE40_RS19830 0.81 -0.5
67,411 + -1.6
67,498 + ABIE40_RS19835 0.13 +1.6
67,498 + ABIE40_RS19835 0.13 -0.4
67,530 + ABIE40_RS19835 0.17 +0.1
67,629 + ABIE40_RS19835 0.31 +0.3
67,629 + ABIE40_RS19835 0.31 -0.5
67,630 - ABIE40_RS19835 0.31 -0.5
67,683 + ABIE40_RS19835 0.38 -0.6
67,684 - ABIE40_RS19835 0.38 +0.3
67,684 - ABIE40_RS19835 0.38 +1.9
67,685 + ABIE40_RS19835 0.38 +0.8
67,685 + ABIE40_RS19835 0.38 +0.5
67,685 + ABIE40_RS19835 0.38 +0.4
67,685 + ABIE40_RS19835 0.38 +0.5
67,685 + ABIE40_RS19835 0.38 -0.2
67,685 + ABIE40_RS19835 0.38 +0.4
67,686 - ABIE40_RS19835 0.38 +0.4
67,686 - ABIE40_RS19835 0.38 +0.4
67,686 - ABIE40_RS19835 0.38 -0.5
67,775 - ABIE40_RS19835 0.50 -1.3
67,775 - ABIE40_RS19835 0.50 -0.8
67,968 + ABIE40_RS19835 0.77 -1.2
68,140 - -2.7
68,140 - +1.3
68,197 + -1.0
68,197 + +0.0
68,197 + -0.5
68,197 + +0.9
68,198 - +0.1
68,198 - -3.0
68,198 - -0.1
68,231 + +0.3
68,232 - +0.6
68,232 - -1.3
68,302 + ABIE40_RS19840 0.11 -2.2
68,529 + ABIE40_RS19840 0.27 -2.4
68,530 - ABIE40_RS19840 0.28 +0.3
68,564 + ABIE40_RS19840 0.30 -0.4
68,564 + ABIE40_RS19840 0.30 +1.1
68,564 + ABIE40_RS19840 0.30 +1.9
68,564 + ABIE40_RS19840 0.30 -0.1
68,564 + ABIE40_RS19840 0.30 +0.3
68,564 + ABIE40_RS19840 0.30 -1.3
68,564 + ABIE40_RS19840 0.30 -1.0
68,564 + ABIE40_RS19840 0.30 +0.6
68,564 + ABIE40_RS19840 0.30 -0.1
68,564 + ABIE40_RS19840 0.30 +0.7
68,565 - ABIE40_RS19840 0.30 -1.3
68,565 - ABIE40_RS19840 0.30 -0.8
68,565 - ABIE40_RS19840 0.30 -0.7
68,565 - ABIE40_RS19840 0.30 +0.4
68,565 - ABIE40_RS19840 0.30 -0.3
68,565 - ABIE40_RS19840 0.30 -0.1
68,565 - ABIE40_RS19840 0.30 -0.1
68,600 + ABIE40_RS19840 0.33 +0.7
68,600 + ABIE40_RS19840 0.33 +0.4
68,601 - ABIE40_RS19840 0.33 -0.7
68,601 - ABIE40_RS19840 0.33 +0.5
68,601 - ABIE40_RS19840 0.33 -0.5
68,601 - ABIE40_RS19840 0.33 -1.2
68,601 - ABIE40_RS19840 0.33 +1.1
68,601 - ABIE40_RS19840 0.33 -1.2
68,601 - ABIE40_RS19840 0.33 -0.6
68,601 - ABIE40_RS19840 0.33 -0.1
68,601 - ABIE40_RS19840 0.33 +0.2
68,818 - ABIE40_RS19840 0.48 +1.0
68,890 + ABIE40_RS19840 0.53 -0.3
68,890 + ABIE40_RS19840 0.53 -0.9
68,890 + ABIE40_RS19840 0.53 +1.3
68,891 - ABIE40_RS19840 0.53 -1.1
68,934 + ABIE40_RS19840 0.56 +0.2
69,033 + ABIE40_RS19840 0.63 +1.5

Or see this region's nucleotide sequence