Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS13635

Experiment: L-Lysine (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Lysine (C)
2,659,344	+		ABIE40_RS13630	0.22	-1.2
2,659,345	-		ABIE40_RS13630	0.22	-1.0
2,659,427	+		ABIE40_RS13630	0.31	-1.0
2,659,428	-		ABIE40_RS13630	0.31	+0.2
2,659,457	+		ABIE40_RS13630	0.34	-0.5
2,659,458	-		ABIE40_RS13630	0.34	-1.3
2,659,458	-		ABIE40_RS13630	0.34	-0.3
2,659,524	+		ABIE40_RS13630	0.40	-0.3
2,659,524	+		ABIE40_RS13630	0.40	+0.8
2,659,524	+		ABIE40_RS13630	0.40	+0.3
2,659,636	-		ABIE40_RS13630	0.52	-1.6
2,659,695	+		ABIE40_RS13630	0.58	-0.6
2,659,695	+		ABIE40_RS13630	0.58	-2.5
2,659,695	+		ABIE40_RS13630	0.58	+0.2
2,659,695	+		ABIE40_RS13630	0.58	-0.9
2,659,696	-		ABIE40_RS13630	0.58	-0.2
2,659,696	-		ABIE40_RS13630	0.58	-0.2
2,659,696	-		ABIE40_RS13630	0.58	+0.4
2,659,696	-		ABIE40_RS13630	0.58	-0.2
2,659,696	-		ABIE40_RS13630	0.58	+0.7
2,659,815	+		ABIE40_RS13630	0.70	+0.6
2,659,815	+		ABIE40_RS13630	0.70	-0.6
2,659,816	-		ABIE40_RS13630	0.70	-1.1
2,659,816	-		ABIE40_RS13630	0.70	-1.0
2,659,816	-		ABIE40_RS13630	0.70	+0.4
2,659,888	-		ABIE40_RS13630	0.77	-2.5
2,659,888	-		ABIE40_RS13630	0.77	-0.7
2,659,888	-		ABIE40_RS13630	0.77	-0.6
2,659,921	-		ABIE40_RS13630	0.80	-0.2
2,659,921	-		ABIE40_RS13630	0.80	+0.1
2,659,921	-		ABIE40_RS13630	0.80	-0.3
2,659,921	-		ABIE40_RS13630	0.80	+1.3
2,659,983	+		ABIE40_RS13630	0.86	+0.4
2,660,049	+				-3.2
2,660,050	-				-1.5
2,660,050	-				+0.4
2,660,102	+				+1.1
2,660,116	-				-0.3
2,660,125	+				-0.2
2,660,126	-				-0.5
2,660,126	-				-0.5
2,660,214	+				-0.1
2,660,214	+				+0.0
2,660,214	+				-0.9
2,660,214	+				-2.5
2,660,215	-				-0.8
2,660,215	-				-1.4
2,660,215	-				-0.1
2,660,314	+				-1.4
2,660,314	+				-1.2
2,660,315	-				-0.4
2,660,315	-				+0.1
2,660,315	-				-0.2
2,660,315	-				+1.3
2,660,315	-				-0.2
2,660,366	+				-0.7
2,660,367	-				+0.8
2,660,367	-				-0.4
2,660,436	+				-1.2
2,660,436	+				-3.3
2,660,436	+				-2.3
2,660,437	-				-0.6
2,660,478	-		ABIE40_RS13635	0.12	-2.5
2,660,515	+		ABIE40_RS13635	0.15	-1.7
2,660,516	-		ABIE40_RS13635	0.15	-2.6
2,660,516	-		ABIE40_RS13635	0.15	-2.9
2,660,516	-		ABIE40_RS13635	0.15	-1.6
2,660,516	-		ABIE40_RS13635	0.15	+1.4
2,660,516	-		ABIE40_RS13635	0.15	-3.3
2,660,534	+		ABIE40_RS13635	0.16	-4.0
2,660,534	+		ABIE40_RS13635	0.16	-1.9
2,660,534	+		ABIE40_RS13635	0.16	-3.7
2,660,590	-		ABIE40_RS13635	0.21	-2.5
2,660,631	+		ABIE40_RS13635	0.24	-2.6
2,660,631	+		ABIE40_RS13635	0.24	-2.3
2,660,632	-		ABIE40_RS13635	0.24	-1.3
2,660,632	-		ABIE40_RS13635	0.24	-3.7
2,660,633	+		ABIE40_RS13635	0.24	-0.2
2,660,686	+		ABIE40_RS13635	0.28	-3.4
2,660,793	+		ABIE40_RS13635	0.37	-2.5
2,660,793	+		ABIE40_RS13635	0.37	-4.4
2,660,793	+		ABIE40_RS13635	0.37	-3.7
2,660,794	-		ABIE40_RS13635	0.37	-0.2
2,660,889	+		ABIE40_RS13635	0.44	-2.2
2,660,890	-		ABIE40_RS13635	0.45	-3.1
2,660,895	-		ABIE40_RS13635	0.45	-1.5
2,660,895	-		ABIE40_RS13635	0.45	-2.8
2,660,914	-		ABIE40_RS13635	0.46	-2.6
2,660,958	+		ABIE40_RS13635	0.50	-2.6
2,660,958	+		ABIE40_RS13635	0.50	-1.7
2,660,961	+		ABIE40_RS13635	0.50	-3.8
2,660,961	+		ABIE40_RS13635	0.50	-4.2
2,660,961	+		ABIE40_RS13635	0.50	-4.3
2,660,961	+		ABIE40_RS13635	0.50	-1.2
2,660,961	+		ABIE40_RS13635	0.50	-2.4
2,660,961	+		ABIE40_RS13635	0.50	-2.9
2,660,961	+		ABIE40_RS13635	0.50	-4.0
2,660,962	-		ABIE40_RS13635	0.50	-1.8
2,660,962	-		ABIE40_RS13635	0.50	-2.3
2,660,962	-		ABIE40_RS13635	0.50	-3.3
2,660,962	-		ABIE40_RS13635	0.50	-2.4
2,660,965	+		ABIE40_RS13635	0.50	+1.4
2,660,965	+		ABIE40_RS13635	0.50	-1.2
2,660,974	+		ABIE40_RS13635	0.51	-1.5
2,660,974	+		ABIE40_RS13635	0.51	-3.2
2,660,975	-		ABIE40_RS13635	0.51	-3.7
2,660,975	-		ABIE40_RS13635	0.51	-3.9
2,661,030	+		ABIE40_RS13635	0.56	-1.1
2,661,059	+		ABIE40_RS13635	0.58	-1.8
2,661,059	+		ABIE40_RS13635	0.58	-3.9
2,661,060	-		ABIE40_RS13635	0.58	-2.9
2,661,093	+		ABIE40_RS13635	0.61	-3.1
2,661,094	-		ABIE40_RS13635	0.61	-2.8
2,661,095	+		ABIE40_RS13635	0.61	-2.2
2,661,095	+		ABIE40_RS13635	0.61	-2.3
2,661,095	+		ABIE40_RS13635	0.61	-2.8
2,661,096	-		ABIE40_RS13635	0.61	-1.9
2,661,163	+		ABIE40_RS13635	0.66	-2.5
2,661,164	-		ABIE40_RS13635	0.66	-2.2
2,661,164	-		ABIE40_RS13635	0.66	-3.6
2,661,164	-		ABIE40_RS13635	0.66	-2.6
2,661,169	+		ABIE40_RS13635	0.67	-2.5
2,661,169	+		ABIE40_RS13635	0.67	-2.1
2,661,169	+		ABIE40_RS13635	0.67	-2.1
2,661,177	-		ABIE40_RS13635	0.67	-3.2
2,661,177	-		ABIE40_RS13635	0.67	-3.3
2,661,253	-		ABIE40_RS13635	0.73	-3.4
2,661,284	+		ABIE40_RS13635	0.76	-2.3
2,661,284	+		ABIE40_RS13635	0.76	-0.6
2,661,284	+		ABIE40_RS13635	0.76	-2.7
2,661,285	-		ABIE40_RS13635	0.76	-2.5
2,661,285	-		ABIE40_RS13635	0.76	-2.8
2,661,285	-		ABIE40_RS13635	0.76	-1.0
2,661,285	-		ABIE40_RS13635	0.76	-3.1
2,661,285	-		ABIE40_RS13635	0.76	-3.1
2,661,285	-		ABIE40_RS13635	0.76	-2.1
2,661,285	-		ABIE40_RS13635	0.76	-2.7
2,661,300	+		ABIE40_RS13635	0.77	-3.2
2,661,325	+		ABIE40_RS13635	0.79	-2.3
2,661,325	+		ABIE40_RS13635	0.79	-2.5
2,661,325	+		ABIE40_RS13635	0.79	-2.5
2,661,325	+		ABIE40_RS13635	0.79	-2.8
2,661,325	+		ABIE40_RS13635	0.79	-3.5
2,661,325	+		ABIE40_RS13635	0.79	-2.1
2,661,325	+		ABIE40_RS13635	0.79	+0.7
2,661,325	+		ABIE40_RS13635	0.79	-3.1
2,661,326	-		ABIE40_RS13635	0.79	-3.9
2,661,326	-		ABIE40_RS13635	0.79	-1.2
2,661,326	-		ABIE40_RS13635	0.79	-2.4
2,661,326	-		ABIE40_RS13635	0.79	-2.4
2,661,326	-		ABIE40_RS13635	0.79	-2.0
2,661,326	-		ABIE40_RS13635	0.79	+0.1
2,661,326	-		ABIE40_RS13635	0.79	-5.0
2,661,326	-		ABIE40_RS13635	0.79	-3.3
2,661,326	-		ABIE40_RS13635	0.79	-3.4
2,661,384	+		ABIE40_RS13635	0.84	-2.5
2,661,385	-		ABIE40_RS13635	0.84	-4.2
2,661,402	-		ABIE40_RS13635	0.85	-2.7
2,661,402	-		ABIE40_RS13635	0.85	-0.6
2,661,471	+				-1.7
2,661,471	+				-1.9
2,661,472	-				-2.9
2,661,472	-				-2.4
2,661,509	+				-4.0
2,661,509	+				-2.6
2,661,535	+				-0.2
2,661,656	-				-0.8
2,661,697	+				-0.3
2,661,697	+				+0.2
2,661,697	+				-1.8
2,661,698	-				-0.6
2,661,698	-				+0.7
2,661,698	-				-0.6
2,661,701	+				+0.5
2,661,701	+				-0.3
2,661,702	-				-0.4
2,661,707	+				-0.2
2,661,779	+				-1.2
2,661,779	+				-0.3
2,661,779	+				-0.1
2,661,780	-				-0.2
2,661,780	-				-0.2
2,661,781	+				+2.1
2,661,781	+				-1.5
2,661,781	+				+0.5
2,661,781	+				+1.4
2,661,781	+				+0.3
2,661,781	+				-1.4
2,661,781	+				+0.0
2,661,781	+				-1.9
2,661,781	+				+0.7
2,661,781	+				-1.0
2,661,781	+				-0.0
2,661,781	+				+0.1
2,661,781	+				+0.4
2,661,782	-				-0.3
2,661,782	-				+0.8
2,661,782	-				+0.5
2,661,782	-				+3.4
2,661,782	-				+0.6
2,661,782	-				-1.0
2,661,782	-				-0.5
2,661,782	-				+0.1
2,661,782	-				-0.2
2,661,807	-				-1.4
2,661,931	+		ABIE40_RS13640	0.18	+0.5
2,661,932	-		ABIE40_RS13640	0.18	-2.5
2,662,051	+		ABIE40_RS13640	0.29	-0.0
2,662,051	+		ABIE40_RS13640	0.29	+0.2
2,662,051	+		ABIE40_RS13640	0.29	-0.0
2,662,051	+		ABIE40_RS13640	0.29	+1.0
2,662,051	+		ABIE40_RS13640	0.29	-0.2
2,662,052	-		ABIE40_RS13640	0.29	+0.0
2,662,052	-		ABIE40_RS13640	0.29	-0.3
2,662,052	-		ABIE40_RS13640	0.29	+0.2
2,662,207	+		ABIE40_RS13640	0.42	-0.3
2,662,208	-		ABIE40_RS13640	0.42	-0.1
2,662,208	-		ABIE40_RS13640	0.42	+0.1
2,662,208	-		ABIE40_RS13640	0.42	+0.3
2,662,208	-		ABIE40_RS13640	0.42	+0.0
2,662,208	-		ABIE40_RS13640	0.42	+0.7
2,662,228	+		ABIE40_RS13640	0.43	-1.0
2,662,229	-		ABIE40_RS13640	0.44	+1.0
2,662,443	-		ABIE40_RS13640	0.62	-0.8