Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS12185

Experiment: L-Lysine (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Lysine (C)
2,374,637	+				+0.8
2,374,637	+				-0.2
2,374,637	+				-0.9
2,374,637	+				-0.7
2,374,637	+				-1.1
2,374,637	+				+1.2
2,374,638	-				+2.8
2,374,638	-				-0.3
2,374,638	-				-0.5
2,374,638	-				-1.7
2,374,638	-				-0.8
2,374,638	-				+0.2
2,374,638	-				-0.1
2,374,638	-				+0.5
2,374,639	+				+1.5
2,374,796	-				+0.2
2,374,796	-				-3.7
2,374,796	-				+0.0
2,374,796	-				-1.0
2,374,796	-				-0.6
2,374,796	-				-0.5
2,374,799	+				-1.4
2,374,799	+				+0.4
2,374,799	+				-0.2
2,374,799	+				-0.6
2,374,799	+				+1.7
2,374,800	-				-0.7
2,374,800	-				+0.1
2,374,800	-				-0.3
2,374,800	-				-1.7
2,374,800	-				+0.1
2,374,849	-				-0.8
2,374,849	-				+0.6
2,374,850	+				+0.4
2,374,851	-				+0.5
2,374,864	+				-0.2
2,374,864	+				-0.2
2,374,864	+				+1.1
2,374,864	+				+0.2
2,374,865	-				-0.5
2,374,865	-				-1.9
2,374,868	+				-0.7
2,374,868	+				+0.2
2,374,868	+				+1.1
2,374,869	-				+0.7
2,374,890	+		ABIE40_RS12175	0.11	-1.0
2,374,890	+		ABIE40_RS12175	0.11	+1.2
2,374,890	+		ABIE40_RS12175	0.11	+1.4
2,374,891	-		ABIE40_RS12175	0.11	+1.0
2,374,891	-		ABIE40_RS12175	0.11	-0.1
2,374,896	+		ABIE40_RS12175	0.13	+0.0
2,374,896	+		ABIE40_RS12175	0.13	+0.2
2,374,897	-		ABIE40_RS12175	0.13	-0.6
2,374,897	-		ABIE40_RS12175	0.13	-0.1
2,375,194	+		ABIE40_RS12175	0.90	-1.5
2,375,194	+		ABIE40_RS12175	0.90	+1.3
2,375,195	-				-0.9
2,375,195	-				-1.0
2,375,195	-				-0.5
2,375,195	-				+0.6
2,375,195	-				+1.0
2,375,195	-				-2.6
2,375,221	-				+0.3
2,375,221	-				+0.7
2,375,221	-				-0.2
2,375,247	+				+0.9
2,375,248	-				-0.6
2,375,248	-				+1.5
2,375,248	-				+0.2
2,375,363	+		ABIE40_RS12180	0.33	+0.0
2,375,364	-		ABIE40_RS12180	0.33	-1.7
2,375,364	-		ABIE40_RS12180	0.33	-1.7
2,375,420	+		ABIE40_RS12180	0.51	-1.4
2,375,421	-		ABIE40_RS12180	0.51	+2.3
2,375,421	-		ABIE40_RS12180	0.51	-0.1
2,375,456	+		ABIE40_RS12180	0.63	-1.4
2,375,456	+		ABIE40_RS12180	0.63	+0.8
2,375,457	-		ABIE40_RS12180	0.63	-0.3
2,375,457	-		ABIE40_RS12180	0.63	+0.5
2,375,457	-		ABIE40_RS12180	0.63	+0.1
2,375,457	-		ABIE40_RS12180	0.63	-0.1
2,375,496	-		ABIE40_RS12180	0.76	-0.3
2,375,526	-		ABIE40_RS12180	0.85	-0.0
2,375,594	+				-0.2
2,375,594	+				-0.9
2,375,594	+				+0.2
2,375,595	-				-0.1
2,375,595	-				-1.0
2,375,595	-				+0.0
2,375,595	-				+0.5
2,375,595	-				-0.7
2,375,836	+		ABIE40_RS12185	0.21	-1.9
2,375,837	-		ABIE40_RS12185	0.21	+0.2
2,375,865	+		ABIE40_RS12185	0.24	+0.1
2,375,866	-		ABIE40_RS12185	0.24	+0.9
2,375,866	-		ABIE40_RS12185	0.24	-0.3
2,376,000	+		ABIE40_RS12185	0.38	-0.3
2,376,000	+		ABIE40_RS12185	0.38	-0.5
2,376,000	+		ABIE40_RS12185	0.38	+0.5
2,376,001	-		ABIE40_RS12185	0.38	+0.1
2,376,001	-		ABIE40_RS12185	0.38	-0.2
2,376,004	+		ABIE40_RS12185	0.38	-0.9
2,376,004	+		ABIE40_RS12185	0.38	+3.3
2,376,004	+		ABIE40_RS12185	0.38	-0.7
2,376,004	+		ABIE40_RS12185	0.38	-0.3
2,376,005	-		ABIE40_RS12185	0.38	+1.3
2,376,005	-		ABIE40_RS12185	0.38	+0.1
2,376,061	+		ABIE40_RS12185	0.44	+0.2
2,376,061	+		ABIE40_RS12185	0.44	-0.4
2,376,091	+		ABIE40_RS12185	0.47	+1.8
2,376,091	+		ABIE40_RS12185	0.47	-0.9
2,376,131	+		ABIE40_RS12185	0.51	-1.7
2,376,131	+		ABIE40_RS12185	0.51	+0.5
2,376,132	-		ABIE40_RS12185	0.51	+0.8
2,376,132	-		ABIE40_RS12185	0.51	-1.9
2,376,132	-		ABIE40_RS12185	0.51	-0.3
2,376,132	-		ABIE40_RS12185	0.51	-0.5
2,376,132	-		ABIE40_RS12185	0.51	+1.1
2,376,257	+		ABIE40_RS12185	0.64	-0.2
2,376,257	+		ABIE40_RS12185	0.64	+1.8
2,376,257	+		ABIE40_RS12185	0.64	-0.9
2,376,257	+		ABIE40_RS12185	0.64	+0.3
2,376,258	-		ABIE40_RS12185	0.64	+1.2
2,376,258	-		ABIE40_RS12185	0.64	+0.7
2,376,258	-		ABIE40_RS12185	0.64	+2.2
2,376,258	-		ABIE40_RS12185	0.64	+0.3
2,376,258	-		ABIE40_RS12185	0.64	+0.2
2,376,258	-		ABIE40_RS12185	0.64	+1.1
2,376,305	-		ABIE40_RS12185	0.69	+1.3
2,376,305	-		ABIE40_RS12185	0.69	-0.0
2,376,305	-		ABIE40_RS12185	0.69	+0.0
2,376,483	-		ABIE40_RS12185	0.87	+1.7
2,376,561	+				+0.1
2,376,564	+				+0.7
2,376,564	+				-0.3
2,376,565	-				-0.9
2,376,676	+				+1.0
2,376,676	+				-0.3
2,376,676	+				-0.5
2,376,676	+				-0.3
2,376,676	+				-0.1
2,376,676	+				+0.3
2,376,676	+				-0.7
2,376,676	+				+1.1
2,376,676	+				-0.4
2,376,676	+				+0.5
2,376,676	+				-0.3
2,376,676	+				-0.0
2,376,676	+				-0.3
2,376,677	-				+0.7
2,376,677	-				+0.3
2,376,677	-				+0.0
2,376,677	-				+0.5
2,376,677	-				+1.9
2,376,678	+				-0.3
2,376,678	+				-1.5
2,376,678	+				+0.3
2,376,678	+				-0.3
2,376,678	+				+0.0
2,376,679	-				-0.4
2,376,679	-				+1.1
2,376,679	-				-0.2
2,376,679	-				+1.3
2,376,679	-				+0.1
2,376,679	-				-0.6
2,376,679	-				-0.4
2,376,679	-				+0.1
2,376,679	-				-1.9
2,376,679	-				-0.5
2,376,680	+				+0.6
2,376,681	-				-1.6
2,376,681	-				-0.3
2,376,754	+				-0.7
2,376,755	-				-2.6
2,376,755	-				-0.1
2,376,786	+				-0.2
2,376,786	+				-0.7
2,376,787	-				+1.2
2,376,787	-				-0.4
2,376,787	-				-0.5
2,376,787	-				-0.4
2,376,787	-				-0.2
2,376,787	-				+0.2
2,376,899	+				+0.9
2,376,899	+				-0.6
2,376,902	+				-0.4
2,376,903	-				-0.0
2,376,934	+				-0.9
2,376,934	+				+0.0
2,376,935	-				-0.6
2,376,935	-				+0.6
2,376,935	-				-1.1
2,376,935	-				+1.2
2,376,935	-				-1.2
2,376,992	+				-0.4
2,376,993	-				-0.9
2,377,091	-		ABIE40_RS12190	0.17	-1.1
2,377,213	+		ABIE40_RS12190	0.40	-1.5
2,377,213	+		ABIE40_RS12190	0.40	+0.4
2,377,214	-		ABIE40_RS12190	0.40	+0.1
2,377,219	+		ABIE40_RS12190	0.41	-1.0
2,377,219	+		ABIE40_RS12190	0.41	+0.5
2,377,219	+		ABIE40_RS12190	0.41	-0.0
2,377,220	-		ABIE40_RS12190	0.41	-0.4
2,377,220	-		ABIE40_RS12190	0.41	+0.5
2,377,267	+		ABIE40_RS12190	0.50	+0.1
2,377,342	+		ABIE40_RS12190	0.64	+2.9
2,377,343	-		ABIE40_RS12190	0.64	-0.1
2,377,343	-		ABIE40_RS12190	0.64	+0.4
2,377,343	-		ABIE40_RS12190	0.64	-0.8
2,377,356	+		ABIE40_RS12190	0.67	+0.7
2,377,356	+		ABIE40_RS12190	0.67	-2.3
2,377,356	+		ABIE40_RS12190	0.67	-0.1
2,377,356	+		ABIE40_RS12190	0.67	-0.1
2,377,356	+		ABIE40_RS12190	0.67	+2.2
2,377,357	-		ABIE40_RS12190	0.67	-0.2
2,377,357	-		ABIE40_RS12190	0.67	+0.4
2,377,363	+		ABIE40_RS12190	0.68	-0.7
2,377,363	+		ABIE40_RS12190	0.68	-0.2
2,377,363	+		ABIE40_RS12190	0.68	-0.6
2,377,363	+		ABIE40_RS12190	0.68	-0.4
2,377,363	+		ABIE40_RS12190	0.68	-1.3
2,377,364	-		ABIE40_RS12190	0.68	-1.9
2,377,364	-		ABIE40_RS12190	0.68	-0.3
2,377,364	-		ABIE40_RS12190	0.68	-1.5
2,377,364	-		ABIE40_RS12190	0.68	-0.1
2,377,407	+		ABIE40_RS12190	0.76	-0.2
2,377,407	+		ABIE40_RS12190	0.76	+0.2
2,377,407	+		ABIE40_RS12190	0.76	+0.0
2,377,407	+		ABIE40_RS12190	0.76	-2.5
2,377,408	-		ABIE40_RS12190	0.77	+0.2
2,377,408	-		ABIE40_RS12190	0.77	+0.2
2,377,408	-		ABIE40_RS12190	0.77	+0.8
2,377,498	+				-0.3
2,377,498	+				-1.1
2,377,498	+				-0.2
2,377,498	+				-0.1
2,377,499	-				+0.2
2,377,499	-				+1.1
2,377,499	-				-1.4
2,377,530	+				-1.4
2,377,530	+				-0.2
2,377,531	-				-0.6
2,377,562	+				+0.7
2,377,562	+				-0.2
2,377,562	+				+0.3
2,377,562	+				-0.8
2,377,563	-				+0.2
2,377,563	-				+0.3
2,377,563	-				-3.9
2,377,565	+				-0.5
2,377,565	+				-0.0
2,377,566	-				-0.1
2,377,581	-				+0.4
2,377,581	-				-0.3
2,377,581	-				-0.5