Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS11550

Experiment: L-Lysine (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Lysine (C)
2,239,679	+		ABIE40_RS11545	0.24	-0.8
2,239,680	-		ABIE40_RS11545	0.25	-0.2
2,239,680	-		ABIE40_RS11545	0.25	-2.0
2,239,680	-		ABIE40_RS11545	0.25	-0.7
2,240,149	+		ABIE40_RS11545	0.73	+1.1
2,240,149	+		ABIE40_RS11545	0.73	+0.6
2,240,149	+		ABIE40_RS11545	0.73	-1.1
2,240,149	+		ABIE40_RS11545	0.73	+0.1
2,240,149	+		ABIE40_RS11545	0.73	+0.2
2,240,149	+		ABIE40_RS11545	0.73	-1.5
2,240,149	+		ABIE40_RS11545	0.73	+1.3
2,240,149	+		ABIE40_RS11545	0.73	+0.3
2,240,149	+		ABIE40_RS11545	0.73	-1.0
2,240,149	+		ABIE40_RS11545	0.73	+0.2
2,240,149	+		ABIE40_RS11545	0.73	-1.5
2,240,149	+		ABIE40_RS11545	0.73	+0.9
2,240,150	-		ABIE40_RS11545	0.73	+0.8
2,240,150	-		ABIE40_RS11545	0.73	-0.0
2,240,150	-		ABIE40_RS11545	0.73	+0.8
2,240,150	-		ABIE40_RS11545	0.73	+0.2
2,240,150	-		ABIE40_RS11545	0.73	-1.2
2,240,150	-		ABIE40_RS11545	0.73	-2.4
2,240,150	-		ABIE40_RS11545	0.73	+0.3
2,240,150	-		ABIE40_RS11545	0.73	+0.0
2,240,150	-		ABIE40_RS11545	0.73	-0.1
2,240,150	-		ABIE40_RS11545	0.73	-0.7
2,240,150	-		ABIE40_RS11545	0.73	-1.5
2,240,150	-		ABIE40_RS11545	0.73	+0.3
2,240,150	-		ABIE40_RS11545	0.73	+0.3
2,240,150	-		ABIE40_RS11545	0.73	+1.3
2,240,150	-		ABIE40_RS11545	0.73	+1.0
2,240,150	-		ABIE40_RS11545	0.73	-0.8
2,240,240	+		ABIE40_RS11545	0.83	-0.7
2,240,240	+		ABIE40_RS11545	0.83	-0.8
2,240,241	-		ABIE40_RS11545	0.83	+3.9
2,240,273	-		ABIE40_RS11545	0.86	+0.5
2,240,273	-		ABIE40_RS11545	0.86	-0.1
2,240,273	-		ABIE40_RS11545	0.86	+0.4
2,240,273	-		ABIE40_RS11545	0.86	-1.5
2,240,273	-		ABIE40_RS11545	0.86	-0.2
2,240,293	+		ABIE40_RS11545	0.88	-0.3
2,240,294	-		ABIE40_RS11545	0.88	-0.2
2,240,294	-		ABIE40_RS11545	0.88	-0.9
2,240,294	-		ABIE40_RS11545	0.88	+0.5
2,240,376	+				-0.4
2,240,376	+				+0.8
2,240,376	+				+0.1
2,240,376	+				+0.5
2,240,376	+				-1.3
2,240,376	+				+0.3
2,240,377	-				+0.7
2,240,377	-				+0.8
2,240,377	-				+1.5
2,240,377	-				-0.8
2,240,377	-				-0.8
2,240,426	+				-0.1
2,240,426	+				-0.3
2,240,426	+				+0.7
2,240,426	+				-1.1
2,240,445	-				+1.3
2,240,483	-				+0.2
2,240,483	-				-1.7
2,240,594	+				-0.2
2,240,595	-				+0.6
2,240,595	-				+0.1
2,240,595	-				+0.1
2,240,657	+				-2.9
2,240,658	-				-0.4
2,240,658	-				-0.8
2,240,658	-				-1.8
2,240,659	+				-0.6
2,240,659	+				+0.0
2,240,659	+				-0.6
2,240,660	-				-1.3
2,240,660	-				-0.6
2,240,660	-				-1.0
2,240,660	-				-0.1
2,240,660	-				-0.6
2,240,660	-				-1.7
2,240,660	-				+0.6
2,240,660	-				-0.2
2,240,713	+				+1.1
2,240,714	-				-0.9
2,240,714	-				-1.1
2,240,750	-		ABIE40_RS11550	0.12	+0.0
2,240,819	+		ABIE40_RS11550	0.18	-0.7
2,240,878	+		ABIE40_RS11550	0.23	-0.3
2,240,941	-		ABIE40_RS11550	0.28	-1.0
2,240,941	-		ABIE40_RS11550	0.28	-0.6
2,240,972	-		ABIE40_RS11550	0.30	+0.3
2,241,067	+		ABIE40_RS11550	0.38	+0.3
2,241,068	-		ABIE40_RS11550	0.38	-0.9
2,241,068	-		ABIE40_RS11550	0.38	-0.1
2,241,068	-		ABIE40_RS11550	0.38	-0.2
2,241,068	-		ABIE40_RS11550	0.38	-0.5
2,241,164	+		ABIE40_RS11550	0.46	-0.9
2,241,164	+		ABIE40_RS11550	0.46	-0.6
2,241,165	-		ABIE40_RS11550	0.46	-0.3
2,241,165	-		ABIE40_RS11550	0.46	-0.5
2,241,166	+		ABIE40_RS11550	0.46	-0.9
2,241,166	+		ABIE40_RS11550	0.46	+0.1
2,241,166	+		ABIE40_RS11550	0.46	-0.8
2,241,166	+		ABIE40_RS11550	0.46	-0.7
2,241,166	+		ABIE40_RS11550	0.46	+0.2
2,241,166	+		ABIE40_RS11550	0.46	+0.6
2,241,166	+		ABIE40_RS11550	0.46	-0.1
2,241,167	-		ABIE40_RS11550	0.46	+0.7
2,241,167	-		ABIE40_RS11550	0.46	-2.8
2,241,167	-		ABIE40_RS11550	0.46	-2.1
2,241,167	-		ABIE40_RS11550	0.46	+0.2
2,241,167	-		ABIE40_RS11550	0.46	-0.9
2,241,167	-		ABIE40_RS11550	0.46	-0.8
2,241,167	-		ABIE40_RS11550	0.46	-1.7
2,241,167	-		ABIE40_RS11550	0.46	-0.6
2,241,167	-		ABIE40_RS11550	0.46	+0.9
2,241,167	-		ABIE40_RS11550	0.46	-0.4
2,241,172	+		ABIE40_RS11550	0.46	-1.1
2,241,172	+		ABIE40_RS11550	0.46	+0.1
2,241,173	-		ABIE40_RS11550	0.47	-2.2
2,241,173	-		ABIE40_RS11550	0.47	-1.1
2,241,173	-		ABIE40_RS11550	0.47	-0.6
2,241,184	+		ABIE40_RS11550	0.47	-0.1
2,241,184	+		ABIE40_RS11550	0.47	-1.5
2,241,185	-		ABIE40_RS11550	0.47	-1.0
2,241,192	-		ABIE40_RS11550	0.48	-0.5
2,241,192	-		ABIE40_RS11550	0.48	-1.3
2,241,484	+		ABIE40_RS11550	0.72	-0.8
2,241,484	+		ABIE40_RS11550	0.72	-0.4
2,241,496	+		ABIE40_RS11550	0.73	-0.1
2,241,496	+		ABIE40_RS11550	0.73	-2.0
2,241,497	-		ABIE40_RS11550	0.73	+0.3
2,241,497	-		ABIE40_RS11550	0.73	+0.4
2,241,497	-		ABIE40_RS11550	0.73	-1.9
2,241,572	-		ABIE40_RS11550	0.79	+0.4
2,241,572	-		ABIE40_RS11550	0.79	+2.9
2,241,616	+		ABIE40_RS11550	0.83	+0.1
2,241,616	+		ABIE40_RS11550	0.83	-0.0
2,241,617	-		ABIE40_RS11550	0.83	+1.3
2,241,617	-		ABIE40_RS11550	0.83	-0.2
2,241,617	-		ABIE40_RS11550	0.83	-3.9
2,241,622	+		ABIE40_RS11550	0.83	-1.0
2,241,622	+		ABIE40_RS11550	0.83	-0.6
2,241,623	-		ABIE40_RS11550	0.83	-2.3
2,241,623	-		ABIE40_RS11550	0.83	-1.0
2,241,623	-		ABIE40_RS11550	0.83	-0.7
2,241,623	-		ABIE40_RS11550	0.83	-1.9
2,241,836	+				-2.2
2,241,849	+				-0.4
2,241,850	-				+0.9
2,241,850	-				-1.0
2,241,856	-				-0.8
2,241,911	+				-0.1
2,241,912	-				+4.5
2,241,912	-				-0.1
2,241,912	-				-0.8
2,241,912	-				-0.7
2,241,971	+		ABIE40_RS11555	0.13	+0.5
2,241,972	-		ABIE40_RS11555	0.13	-0.8
2,242,038	+		ABIE40_RS11555	0.19	+0.9
2,242,038	+		ABIE40_RS11555	0.19	-0.3
2,242,038	+		ABIE40_RS11555	0.19	-0.1
2,242,038	+		ABIE40_RS11555	0.19	-0.2
2,242,038	+		ABIE40_RS11555	0.19	+0.7
2,242,039	-		ABIE40_RS11555	0.19	-2.2
2,242,039	-		ABIE40_RS11555	0.19	-0.3
2,242,039	-		ABIE40_RS11555	0.19	-1.2
2,242,039	-		ABIE40_RS11555	0.19	+0.2
2,242,039	-		ABIE40_RS11555	0.19	-0.5
2,242,074	+		ABIE40_RS11555	0.22	-0.3
2,242,385	+		ABIE40_RS11555	0.51	+0.0
2,242,385	+		ABIE40_RS11555	0.51	-0.7
2,242,385	+		ABIE40_RS11555	0.51	+0.4
2,242,386	-		ABIE40_RS11555	0.51	-1.0
2,242,386	-		ABIE40_RS11555	0.51	-1.1
2,242,386	-		ABIE40_RS11555	0.51	-0.9
2,242,427	+		ABIE40_RS11555	0.55	+0.3
2,242,490	+		ABIE40_RS11555	0.61	+2.0
2,242,491	-		ABIE40_RS11555	0.61	-0.2
2,242,516	+		ABIE40_RS11555	0.64	+0.5
2,242,516	+		ABIE40_RS11555	0.64	-0.9
2,242,516	+		ABIE40_RS11555	0.64	-2.6
2,242,608	-		ABIE40_RS11555	0.72	-0.8
2,242,608	-		ABIE40_RS11555	0.72	-2.5
2,242,608	-		ABIE40_RS11555	0.72	-1.3
2,242,608	-		ABIE40_RS11555	0.72	+0.2
2,242,619	-		ABIE40_RS11555	0.73	-1.0
2,242,619	-		ABIE40_RS11555	0.73	-0.9
2,242,781	+		ABIE40_RS11555	0.88	-0.2