Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS09510

Experiment: L-Lysine (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Lysine (C)
1,835,750	+		ABIE40_RS09505	0.26	-0.4
1,835,751	-		ABIE40_RS09505	0.26	-0.4
1,835,751	-		ABIE40_RS09505	0.26	+0.9
1,835,751	-		ABIE40_RS09505	0.26	+0.7
1,835,927	+		ABIE40_RS09505	0.41	-0.9
1,835,972	-		ABIE40_RS09505	0.44	+0.4
1,835,972	-		ABIE40_RS09505	0.44	-2.3
1,836,050	+		ABIE40_RS09505	0.51	-0.7
1,836,050	+		ABIE40_RS09505	0.51	-0.7
1,836,051	-		ABIE40_RS09505	0.51	-0.5
1,836,051	-		ABIE40_RS09505	0.51	-0.8
1,836,051	-		ABIE40_RS09505	0.51	-0.4
1,836,051	-		ABIE40_RS09505	0.51	-1.6
1,836,051	-		ABIE40_RS09505	0.51	+0.3
1,836,051	-		ABIE40_RS09505	0.51	-2.0
1,836,053	+		ABIE40_RS09505	0.51	-0.4
1,836,053	+		ABIE40_RS09505	0.51	+1.7
1,836,053	+		ABIE40_RS09505	0.51	-1.9
1,836,053	+		ABIE40_RS09505	0.51	-1.0
1,836,053	+		ABIE40_RS09505	0.51	+0.2
1,836,053	+		ABIE40_RS09505	0.51	-1.1
1,836,053	+		ABIE40_RS09505	0.51	-1.2
1,836,053	+		ABIE40_RS09505	0.51	-1.0
1,836,054	-		ABIE40_RS09505	0.51	+2.4
1,836,054	-		ABIE40_RS09505	0.51	-0.4
1,836,054	-		ABIE40_RS09505	0.51	-1.4
1,836,062	+		ABIE40_RS09505	0.52	+0.7
1,836,063	-		ABIE40_RS09505	0.52	-0.3
1,836,096	+		ABIE40_RS09505	0.55	-0.1
1,836,096	+		ABIE40_RS09505	0.55	-0.4
1,836,096	+		ABIE40_RS09505	0.55	+1.3
1,836,097	-		ABIE40_RS09505	0.55	-1.1
1,836,327	-		ABIE40_RS09505	0.74	+0.3
1,836,525	+				+1.3
1,836,525	+				+1.7
1,836,525	+				-0.1
1,836,526	-				+1.0
1,836,526	-				-0.4
1,836,526	-				-0.7
1,836,527	+				+0.7
1,836,527	+				+1.0
1,836,527	+				-0.5
1,836,527	+				+1.0
1,836,527	+				-0.6
1,836,527	+				+0.5
1,836,527	+				-1.3
1,836,527	+				+0.4
1,836,527	+				+0.2
1,836,528	-				-1.6
1,836,528	-				-1.3
1,836,528	-				-0.9
1,836,528	-				+1.0
1,836,528	-				-0.4
1,836,528	-				-0.3
1,836,528	-				+0.2
1,836,740	+				-0.7
1,836,740	+				+0.5
1,836,740	+				-1.2
1,836,740	+				-0.2
1,836,740	+				-0.8
1,836,741	-				+0.3
1,836,749	-				-0.2
1,836,864	-		ABIE40_RS09510	0.15	-0.1
1,836,876	-		ABIE40_RS09510	0.16	-2.6
1,836,876	-		ABIE40_RS09510	0.16	-3.1
1,836,984	+		ABIE40_RS09510	0.26	+1.0
1,836,984	+		ABIE40_RS09510	0.26	-2.3
1,836,985	-		ABIE40_RS09510	0.26	-1.7
1,836,985	-		ABIE40_RS09510	0.26	-3.6
1,836,987	-		ABIE40_RS09510	0.26	-1.2
1,837,014	-		ABIE40_RS09510	0.28	-3.4
1,837,184	+		ABIE40_RS09510	0.44	-1.4
1,837,184	+		ABIE40_RS09510	0.44	-1.6
1,837,185	-		ABIE40_RS09510	0.44	+0.0
1,837,199	+		ABIE40_RS09510	0.45	-3.0
1,837,199	+		ABIE40_RS09510	0.45	-0.7
1,837,200	-		ABIE40_RS09510	0.45	-2.4
1,837,238	+		ABIE40_RS09510	0.49	-4.6
1,837,238	+		ABIE40_RS09510	0.49	-1.1
1,837,238	+		ABIE40_RS09510	0.49	-2.0
1,837,238	+		ABIE40_RS09510	0.49	-2.9
1,837,238	+		ABIE40_RS09510	0.49	-2.3
1,837,239	-		ABIE40_RS09510	0.49	-3.4
1,837,239	-		ABIE40_RS09510	0.49	+2.0
1,837,239	-		ABIE40_RS09510	0.49	-0.2
1,837,267	-		ABIE40_RS09510	0.52	-4.5
1,837,267	-		ABIE40_RS09510	0.52	-3.3
1,837,270	+		ABIE40_RS09510	0.52	-1.8
1,837,328	+		ABIE40_RS09510	0.57	-3.1
1,837,394	+		ABIE40_RS09510	0.63	-3.2
1,837,394	+		ABIE40_RS09510	0.63	-2.0
1,837,395	-		ABIE40_RS09510	0.63	-2.3
1,837,445	+		ABIE40_RS09510	0.68	-1.6
1,837,446	-		ABIE40_RS09510	0.68	-3.2
1,837,515	+		ABIE40_RS09510	0.74	-2.1
1,837,515	+		ABIE40_RS09510	0.74	-4.1
1,837,516	-		ABIE40_RS09510	0.74	-0.6
1,837,516	-		ABIE40_RS09510	0.74	-4.1
1,837,516	-		ABIE40_RS09510	0.74	-3.1
1,837,517	+		ABIE40_RS09510	0.74	-2.6
1,837,517	+		ABIE40_RS09510	0.74	-3.4
1,837,517	+		ABIE40_RS09510	0.74	-2.0
1,837,518	-		ABIE40_RS09510	0.75	-2.1
1,837,518	-		ABIE40_RS09510	0.75	-2.1
1,837,518	-		ABIE40_RS09510	0.75	-2.9
1,837,518	-		ABIE40_RS09510	0.75	-1.0
1,837,538	+		ABIE40_RS09510	0.76	-3.6
1,837,541	+		ABIE40_RS09510	0.77	-3.5
1,837,542	-		ABIE40_RS09510	0.77	-1.6
1,837,542	-		ABIE40_RS09510	0.77	-3.1
1,837,578	+		ABIE40_RS09510	0.80	-0.4
1,837,579	-		ABIE40_RS09510	0.80	-3.1
1,837,579	-		ABIE40_RS09510	0.80	-1.3
1,837,580	+		ABIE40_RS09510	0.80	-2.1
1,837,580	+		ABIE40_RS09510	0.80	-3.4
1,837,581	-		ABIE40_RS09510	0.80	-2.7
1,837,581	-		ABIE40_RS09510	0.80	-4.6
1,837,643	+		ABIE40_RS09510	0.86	-2.1
1,837,704	+				-1.5
1,837,704	+				-0.7
1,837,704	+				-2.1
1,837,705	-				-1.8
1,837,705	-				+1.0
1,837,705	-				+0.7
1,837,705	-				+0.2
1,837,781	+				-1.6
1,837,781	+				-1.9
1,837,819	+				-1.9
1,837,858	+				-1.8
1,837,859	-				-1.4
1,837,872	+				-1.2
1,837,873	-				-1.7
1,837,873	-				-0.2
1,837,873	-				-1.6
1,837,918	+				-2.8
1,837,965	+				+1.0
1,837,970	+				+0.7
1,838,099	-				+0.8
1,838,099	-				+0.2
1,838,185	+		ABIE40_RS09520	0.14	+0.4
1,838,185	+		ABIE40_RS09520	0.14	+0.3
1,838,185	+		ABIE40_RS09520	0.14	+0.1
1,838,186	-		ABIE40_RS09520	0.14	-0.4
1,838,186	-		ABIE40_RS09520	0.14	-1.0
1,838,186	-		ABIE40_RS09520	0.14	-1.0
1,838,186	-		ABIE40_RS09520	0.14	-1.0
1,838,251	-		ABIE40_RS09520	0.27	+0.2
1,838,251	-		ABIE40_RS09520	0.27	-1.8
1,838,329	+		ABIE40_RS09520	0.44	+0.2
1,838,329	+		ABIE40_RS09520	0.44	-0.7
1,838,330	-		ABIE40_RS09520	0.44	+0.8
1,838,330	-		ABIE40_RS09520	0.44	+1.2
1,838,471	-		ABIE40_RS09520	0.73	+0.4
1,838,597	+				-0.3
1,838,597	+				+0.4
1,838,673	+				-0.8
1,838,674	-				-2.1
1,838,716	+				-0.7
1,838,737	+				-0.5
1,838,737	+				+0.0
1,838,738	-				+0.5
1,838,738	-				-1.1
1,838,748	+				-0.2
1,838,749	-				+1.2