Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS08865

Experiment: L-Lysine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS08855 and ABIE40_RS08860 are separated by 259 nucleotidesABIE40_RS08860 and ABIE40_RS08865 are separated by 10 nucleotidesABIE40_RS08865 and ABIE40_RS08870 are separated by 72 nucleotidesABIE40_RS08870 and ABIE40_RS08875 are separated by 26 nucleotidesABIE40_RS08875 and ABIE40_RS08880 are separated by 51 nucleotides ABIE40_RS08855: ABIE40_RS08855 - phasin family protein, at 1,705,399 to 1,705,770 _RS08855 ABIE40_RS08860: ABIE40_RS08860 - ATP-dependent Clp protease adapter ClpS, at 1,706,030 to 1,706,383 _RS08860 ABIE40_RS08865: ABIE40_RS08865 - ATP-dependent Clp protease ATP-binding subunit ClpA, at 1,706,394 to 1,708,886 _RS08865 ABIE40_RS08870: ABIE40_RS08870 - Dabb family protein, at 1,708,959 to 1,709,249 _RS08870 ABIE40_RS08875: ABIE40_RS08875 - HIT family protein, at 1,709,276 to 1,709,704 _RS08875 ABIE40_RS08880: ABIE40_RS08880 - GNAT family N-acetyltransferase, at 1,709,756 to 1,710,946 _RS08880 Position (kb) 1706 1707 1708 1709Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 1705.514 kb on - strand, within ABIE40_RS08855at 1705.606 kb on + strand, within ABIE40_RS08855at 1705.606 kb on + strand, within ABIE40_RS08855at 1705.606 kb on + strand, within ABIE40_RS08855at 1705.621 kb on + strand, within ABIE40_RS08855at 1705.621 kb on + strand, within ABIE40_RS08855at 1705.622 kb on - strand, within ABIE40_RS08855at 1705.663 kb on + strand, within ABIE40_RS08855at 1705.663 kb on + strand, within ABIE40_RS08855at 1705.663 kb on + strand, within ABIE40_RS08855at 1705.663 kb on + strand, within ABIE40_RS08855at 1705.663 kb on + strand, within ABIE40_RS08855at 1705.664 kb on - strand, within ABIE40_RS08855at 1705.664 kb on - strand, within ABIE40_RS08855at 1705.664 kb on - strand, within ABIE40_RS08855at 1705.687 kb on + strand, within ABIE40_RS08855at 1705.688 kb on - strand, within ABIE40_RS08855at 1705.863 kb on + strandat 1705.863 kb on + strandat 1705.933 kb on + strandat 1705.948 kb on - strandat 1705.954 kb on + strandat 1705.954 kb on + strandat 1705.954 kb on + strandat 1705.954 kb on + strandat 1705.954 kb on + strandat 1705.954 kb on + strandat 1705.954 kb on + strandat 1705.959 kb on + strandat 1705.960 kb on - strandat 1705.960 kb on - strandat 1706.107 kb on + strand, within ABIE40_RS08860at 1706.107 kb on + strand, within ABIE40_RS08860at 1706.107 kb on + strand, within ABIE40_RS08860at 1706.108 kb on - strand, within ABIE40_RS08860at 1706.113 kb on + strand, within ABIE40_RS08860at 1706.113 kb on + strand, within ABIE40_RS08860at 1706.113 kb on + strand, within ABIE40_RS08860at 1706.114 kb on - strand, within ABIE40_RS08860at 1706.171 kb on + strand, within ABIE40_RS08860at 1706.260 kb on + strand, within ABIE40_RS08860at 1706.290 kb on + strand, within ABIE40_RS08860at 1706.290 kb on + strand, within ABIE40_RS08860at 1706.290 kb on + strand, within ABIE40_RS08860at 1706.290 kb on + strand, within ABIE40_RS08860at 1706.290 kb on + strand, within ABIE40_RS08860at 1706.290 kb on + strand, within ABIE40_RS08860at 1706.291 kb on - strand, within ABIE40_RS08860at 1706.291 kb on - strand, within ABIE40_RS08860at 1706.291 kb on - strand, within ABIE40_RS08860at 1706.291 kb on - strand, within ABIE40_RS08860at 1706.294 kb on + strand, within ABIE40_RS08860at 1706.294 kb on + strand, within ABIE40_RS08860at 1706.411 kb on + strandat 1706.411 kb on + strandat 1706.417 kb on - strandat 1706.580 kb on + strandat 1706.581 kb on - strandat 1706.761 kb on - strand, within ABIE40_RS08865at 1706.791 kb on - strand, within ABIE40_RS08865at 1706.805 kb on + strand, within ABIE40_RS08865at 1706.806 kb on - strand, within ABIE40_RS08865at 1706.806 kb on - strand, within ABIE40_RS08865at 1706.956 kb on - strand, within ABIE40_RS08865at 1707.075 kb on + strand, within ABIE40_RS08865at 1707.075 kb on + strand, within ABIE40_RS08865at 1707.412 kb on - strand, within ABIE40_RS08865at 1707.412 kb on - strand, within ABIE40_RS08865at 1707.412 kb on - strand, within ABIE40_RS08865at 1707.412 kb on - strand, within ABIE40_RS08865at 1707.420 kb on + strand, within ABIE40_RS08865at 1707.531 kb on + strand, within ABIE40_RS08865at 1707.531 kb on + strand, within ABIE40_RS08865at 1707.531 kb on + strand, within ABIE40_RS08865at 1707.532 kb on - strand, within ABIE40_RS08865at 1707.543 kb on + strand, within ABIE40_RS08865at 1707.543 kb on + strand, within ABIE40_RS08865at 1707.543 kb on + strand, within ABIE40_RS08865at 1707.604 kb on - strand, within ABIE40_RS08865at 1707.606 kb on - strand, within ABIE40_RS08865at 1707.719 kb on - strand, within ABIE40_RS08865at 1707.808 kb on + strand, within ABIE40_RS08865at 1707.808 kb on + strand, within ABIE40_RS08865at 1707.822 kb on + strand, within ABIE40_RS08865at 1707.833 kb on + strand, within ABIE40_RS08865at 1708.011 kb on + strand, within ABIE40_RS08865at 1708.011 kb on + strand, within ABIE40_RS08865at 1708.011 kb on + strand, within ABIE40_RS08865at 1708.014 kb on - strand, within ABIE40_RS08865at 1708.059 kb on + strand, within ABIE40_RS08865at 1708.059 kb on + strand, within ABIE40_RS08865at 1708.161 kb on + strand, within ABIE40_RS08865at 1708.161 kb on + strand, within ABIE40_RS08865at 1708.161 kb on + strand, within ABIE40_RS08865at 1708.161 kb on + strand, within ABIE40_RS08865at 1708.161 kb on + strand, within ABIE40_RS08865at 1708.209 kb on - strand, within ABIE40_RS08865at 1708.574 kb on + strand, within ABIE40_RS08865at 1708.574 kb on + strand, within ABIE40_RS08865at 1708.574 kb on + strand, within ABIE40_RS08865at 1708.575 kb on - strand, within ABIE40_RS08865at 1708.575 kb on - strand, within ABIE40_RS08865at 1708.973 kb on - strandat 1709.048 kb on + strand, within ABIE40_RS08870at 1709.048 kb on + strand, within ABIE40_RS08870at 1709.048 kb on + strand, within ABIE40_RS08870at 1709.049 kb on - strand, within ABIE40_RS08870at 1709.049 kb on - strand, within ABIE40_RS08870at 1709.049 kb on - strand, within ABIE40_RS08870at 1709.049 kb on - strand, within ABIE40_RS08870at 1709.049 kb on - strand, within ABIE40_RS08870at 1709.049 kb on - strand, within ABIE40_RS08870at 1709.049 kb on - strand, within ABIE40_RS08870at 1709.050 kb on + strand, within ABIE40_RS08870at 1709.051 kb on - strand, within ABIE40_RS08870at 1709.051 kb on - strand, within ABIE40_RS08870at 1709.051 kb on - strand, within ABIE40_RS08870at 1709.051 kb on - strand, within ABIE40_RS08870at 1709.051 kb on - strand, within ABIE40_RS08870at 1709.051 kb on - strand, within ABIE40_RS08870at 1709.051 kb on - strand, within ABIE40_RS08870at 1709.051 kb on - strand, within ABIE40_RS08870at 1709.051 kb on - strand, within ABIE40_RS08870at 1709.060 kb on - strand, within ABIE40_RS08870at 1709.145 kb on + strand, within ABIE40_RS08870at 1709.237 kb on + strandat 1709.237 kb on + strandat 1709.238 kb on - strandat 1709.253 kb on + strandat 1709.629 kb on - strand, within ABIE40_RS08875at 1709.818 kb on + strandat 1709.818 kb on + strandat 1709.818 kb on + strandat 1709.818 kb on + strandat 1709.819 kb on - strandat 1709.819 kb on - strandat 1709.819 kb on - strandat 1709.851 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lysine (C)
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1,705,514 - ABIE40_RS08855 0.31 -1.5
1,705,606 + ABIE40_RS08855 0.56 -0.4
1,705,606 + ABIE40_RS08855 0.56 -0.7
1,705,606 + ABIE40_RS08855 0.56 +0.3
1,705,621 + ABIE40_RS08855 0.60 -2.7
1,705,621 + ABIE40_RS08855 0.60 +1.5
1,705,622 - ABIE40_RS08855 0.60 +0.2
1,705,663 + ABIE40_RS08855 0.71 -0.4
1,705,663 + ABIE40_RS08855 0.71 -0.1
1,705,663 + ABIE40_RS08855 0.71 -0.0
1,705,663 + ABIE40_RS08855 0.71 +1.9
1,705,663 + ABIE40_RS08855 0.71 +1.3
1,705,664 - ABIE40_RS08855 0.71 -0.3
1,705,664 - ABIE40_RS08855 0.71 +4.0
1,705,664 - ABIE40_RS08855 0.71 -0.2
1,705,687 + ABIE40_RS08855 0.77 +0.9
1,705,688 - ABIE40_RS08855 0.78 -0.0
1,705,863 + -0.3
1,705,863 + -0.0
1,705,933 + +1.2
1,705,948 - -1.3
1,705,954 + -1.1
1,705,954 + +1.3
1,705,954 + +1.0
1,705,954 + -0.5
1,705,954 + +1.0
1,705,954 + +1.5
1,705,954 + +0.7
1,705,959 + -0.6
1,705,960 - -3.8
1,705,960 - -0.0
1,706,107 + ABIE40_RS08860 0.22 -0.9
1,706,107 + ABIE40_RS08860 0.22 +0.2
1,706,107 + ABIE40_RS08860 0.22 -0.3
1,706,108 - ABIE40_RS08860 0.22 -2.3
1,706,113 + ABIE40_RS08860 0.23 -0.9
1,706,113 + ABIE40_RS08860 0.23 +0.3
1,706,113 + ABIE40_RS08860 0.23 +1.8
1,706,114 - ABIE40_RS08860 0.24 -1.7
1,706,171 + ABIE40_RS08860 0.40 +0.8
1,706,260 + ABIE40_RS08860 0.65 +0.5
1,706,290 + ABIE40_RS08860 0.73 -0.1
1,706,290 + ABIE40_RS08860 0.73 +0.4
1,706,290 + ABIE40_RS08860 0.73 -0.7
1,706,290 + ABIE40_RS08860 0.73 -0.8
1,706,290 + ABIE40_RS08860 0.73 +1.9
1,706,290 + ABIE40_RS08860 0.73 +0.5
1,706,291 - ABIE40_RS08860 0.74 -1.1
1,706,291 - ABIE40_RS08860 0.74 -0.5
1,706,291 - ABIE40_RS08860 0.74 -1.3
1,706,291 - ABIE40_RS08860 0.74 -1.9
1,706,294 + ABIE40_RS08860 0.75 +3.7
1,706,294 + ABIE40_RS08860 0.75 +0.7
1,706,411 + -4.3
1,706,411 + -1.9
1,706,417 - -2.9
1,706,580 + -0.9
1,706,581 - +1.1
1,706,761 - ABIE40_RS08865 0.15 -3.5
1,706,791 - ABIE40_RS08865 0.16 -0.5
1,706,805 + ABIE40_RS08865 0.16 -2.5
1,706,806 - ABIE40_RS08865 0.17 -0.9
1,706,806 - ABIE40_RS08865 0.17 +1.3
1,706,956 - ABIE40_RS08865 0.23 -0.7
1,707,075 + ABIE40_RS08865 0.27 -3.6
1,707,075 + ABIE40_RS08865 0.27 -2.0
1,707,412 - ABIE40_RS08865 0.41 -2.4
1,707,412 - ABIE40_RS08865 0.41 -0.5
1,707,412 - ABIE40_RS08865 0.41 -3.6
1,707,412 - ABIE40_RS08865 0.41 -0.7
1,707,420 + ABIE40_RS08865 0.41 -1.1
1,707,531 + ABIE40_RS08865 0.46 -1.9
1,707,531 + ABIE40_RS08865 0.46 -3.2
1,707,531 + ABIE40_RS08865 0.46 +1.9
1,707,532 - ABIE40_RS08865 0.46 -3.1
1,707,543 + ABIE40_RS08865 0.46 -2.6
1,707,543 + ABIE40_RS08865 0.46 +1.9
1,707,543 + ABIE40_RS08865 0.46 -2.5
1,707,604 - ABIE40_RS08865 0.49 -2.7
1,707,606 - ABIE40_RS08865 0.49 -2.3
1,707,719 - ABIE40_RS08865 0.53 -3.5
1,707,808 + ABIE40_RS08865 0.57 -1.5
1,707,808 + ABIE40_RS08865 0.57 -2.2
1,707,822 + ABIE40_RS08865 0.57 +0.6
1,707,833 + ABIE40_RS08865 0.58 -0.6
1,708,011 + ABIE40_RS08865 0.65 -3.5
1,708,011 + ABIE40_RS08865 0.65 -1.7
1,708,011 + ABIE40_RS08865 0.65 -1.9
1,708,014 - ABIE40_RS08865 0.65 -2.5
1,708,059 + ABIE40_RS08865 0.67 +0.9
1,708,059 + ABIE40_RS08865 0.67 -1.8
1,708,161 + ABIE40_RS08865 0.71 -1.7
1,708,161 + ABIE40_RS08865 0.71 -3.0
1,708,161 + ABIE40_RS08865 0.71 -2.1
1,708,161 + ABIE40_RS08865 0.71 -3.3
1,708,161 + ABIE40_RS08865 0.71 +2.5
1,708,209 - ABIE40_RS08865 0.73 -2.6
1,708,574 + ABIE40_RS08865 0.87 +1.1
1,708,574 + ABIE40_RS08865 0.87 -3.5
1,708,574 + ABIE40_RS08865 0.87 +0.1
1,708,575 - ABIE40_RS08865 0.87 -1.5
1,708,575 - ABIE40_RS08865 0.87 -1.7
1,708,973 - -0.1
1,709,048 + ABIE40_RS08870 0.31 -0.5
1,709,048 + ABIE40_RS08870 0.31 -2.8
1,709,048 + ABIE40_RS08870 0.31 +0.4
1,709,049 - ABIE40_RS08870 0.31 -0.4
1,709,049 - ABIE40_RS08870 0.31 +0.2
1,709,049 - ABIE40_RS08870 0.31 -1.4
1,709,049 - ABIE40_RS08870 0.31 -1.7
1,709,049 - ABIE40_RS08870 0.31 -0.1
1,709,049 - ABIE40_RS08870 0.31 -0.5
1,709,049 - ABIE40_RS08870 0.31 -1.7
1,709,050 + ABIE40_RS08870 0.31 +0.1
1,709,051 - ABIE40_RS08870 0.32 +0.3
1,709,051 - ABIE40_RS08870 0.32 +1.1
1,709,051 - ABIE40_RS08870 0.32 -0.8
1,709,051 - ABIE40_RS08870 0.32 +0.1
1,709,051 - ABIE40_RS08870 0.32 +0.4
1,709,051 - ABIE40_RS08870 0.32 +0.2
1,709,051 - ABIE40_RS08870 0.32 -0.2
1,709,051 - ABIE40_RS08870 0.32 +1.9
1,709,051 - ABIE40_RS08870 0.32 -1.5
1,709,060 - ABIE40_RS08870 0.35 -0.6
1,709,145 + ABIE40_RS08870 0.64 -0.3
1,709,237 + -2.5
1,709,237 + +0.5
1,709,238 - -0.0
1,709,253 + +0.1
1,709,629 - ABIE40_RS08875 0.82 -0.3
1,709,818 + +0.5
1,709,818 + -2.6
1,709,818 + +0.9
1,709,818 + +0.4
1,709,819 - +0.9
1,709,819 - +0.4
1,709,819 - +0.0
1,709,851 - -0.3

Or see this region's nucleotide sequence