Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS03660

Experiment: L-Lysine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS03655 and ABIE40_RS03660 are separated by 150 nucleotidesABIE40_RS03660 and ABIE40_RS03665 overlap by 4 nucleotidesABIE40_RS03665 and ABIE40_RS03670 are separated by 76 nucleotides ABIE40_RS03655: ABIE40_RS03655 - histidine--tRNA ligase, at 721,506 to 723,026 _RS03655 ABIE40_RS03660: ABIE40_RS03660 - ATP phosphoribosyltransferase regulatory subunit, at 723,177 to 724,292 _RS03660 ABIE40_RS03665: ABIE40_RS03665 - ATP phosphoribosyltransferase, at 724,289 to 724,984 _RS03665 ABIE40_RS03670: ABIE40_RS03670 - DoxX family protein, at 725,061 to 725,486 _RS03670 Position (kb) 723 724 725Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 723.137 kb on + strandat 723.187 kb on + strandat 723.187 kb on + strandat 723.187 kb on + strandat 723.187 kb on + strandat 723.188 kb on - strandat 723.311 kb on + strand, within ABIE40_RS03660at 723.312 kb on - strand, within ABIE40_RS03660at 723.420 kb on + strand, within ABIE40_RS03660at 723.421 kb on - strand, within ABIE40_RS03660at 723.426 kb on + strand, within ABIE40_RS03660at 723.426 kb on + strand, within ABIE40_RS03660at 723.426 kb on + strand, within ABIE40_RS03660at 723.426 kb on + strand, within ABIE40_RS03660at 723.427 kb on - strand, within ABIE40_RS03660at 723.427 kb on - strand, within ABIE40_RS03660at 723.475 kb on - strand, within ABIE40_RS03660at 723.475 kb on - strand, within ABIE40_RS03660at 723.475 kb on - strand, within ABIE40_RS03660at 724.122 kb on + strand, within ABIE40_RS03660at 724.122 kb on + strand, within ABIE40_RS03660at 724.123 kb on - strand, within ABIE40_RS03660at 724.123 kb on - strand, within ABIE40_RS03660at 724.125 kb on + strand, within ABIE40_RS03660at 724.126 kb on - strand, within ABIE40_RS03660at 724.126 kb on - strand, within ABIE40_RS03660at 724.127 kb on + strand, within ABIE40_RS03660at 724.127 kb on + strand, within ABIE40_RS03660at 724.128 kb on - strand, within ABIE40_RS03660at 724.297 kb on + strandat 724.297 kb on + strandat 724.371 kb on + strand, within ABIE40_RS03665at 724.372 kb on - strand, within ABIE40_RS03665at 724.372 kb on - strand, within ABIE40_RS03665at 724.372 kb on - strand, within ABIE40_RS03665at 724.700 kb on + strand, within ABIE40_RS03665at 724.701 kb on - strand, within ABIE40_RS03665at 724.752 kb on - strand, within ABIE40_RS03665at 724.752 kb on - strand, within ABIE40_RS03665at 724.756 kb on + strand, within ABIE40_RS03665at 724.756 kb on + strand, within ABIE40_RS03665at 724.822 kb on + strand, within ABIE40_RS03665at 725.040 kb on + strandat 725.040 kb on + strandat 725.040 kb on + strandat 725.041 kb on - strandat 725.041 kb on - strandat 725.041 kb on - strandat 725.041 kb on - strandat 725.063 kb on - strandat 725.063 kb on - strandat 725.069 kb on + strandat 725.070 kb on - strandat 725.079 kb on + strandat 725.079 kb on + strandat 725.080 kb on - strandat 725.080 kb on - strandat 725.080 kb on - strandat 725.080 kb on - strandat 725.130 kb on + strand, within ABIE40_RS03670at 725.131 kb on - strand, within ABIE40_RS03670at 725.131 kb on - strand, within ABIE40_RS03670at 725.131 kb on - strand, within ABIE40_RS03670at 725.131 kb on - strand, within ABIE40_RS03670at 725.131 kb on - strand, within ABIE40_RS03670at 725.131 kb on - strand, within ABIE40_RS03670at 725.131 kb on - strand, within ABIE40_RS03670at 725.137 kb on + strand, within ABIE40_RS03670at 725.137 kb on + strand, within ABIE40_RS03670at 725.137 kb on + strand, within ABIE40_RS03670at 725.137 kb on + strand, within ABIE40_RS03670at 725.138 kb on - strand, within ABIE40_RS03670at 725.138 kb on - strand, within ABIE40_RS03670at 725.138 kb on - strand, within ABIE40_RS03670at 725.138 kb on - strand, within ABIE40_RS03670at 725.138 kb on - strand, within ABIE40_RS03670at 725.138 kb on - strand, within ABIE40_RS03670at 725.138 kb on - strand, within ABIE40_RS03670at 725.138 kb on - strand, within ABIE40_RS03670at 725.138 kb on - strand, within ABIE40_RS03670at 725.138 kb on - strand, within ABIE40_RS03670at 725.212 kb on + strand, within ABIE40_RS03670

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lysine (C)
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723,137 + +0.0
723,187 + +0.1
723,187 + -4.3
723,187 + -2.0
723,187 + -3.3
723,188 - -4.9
723,311 + ABIE40_RS03660 0.12 -4.5
723,312 - ABIE40_RS03660 0.12 -2.5
723,420 + ABIE40_RS03660 0.22 -2.5
723,421 - ABIE40_RS03660 0.22 -2.0
723,426 + ABIE40_RS03660 0.22 -3.1
723,426 + ABIE40_RS03660 0.22 -3.0
723,426 + ABIE40_RS03660 0.22 -2.4
723,426 + ABIE40_RS03660 0.22 -4.4
723,427 - ABIE40_RS03660 0.22 -2.9
723,427 - ABIE40_RS03660 0.22 -2.2
723,475 - ABIE40_RS03660 0.27 -0.9
723,475 - ABIE40_RS03660 0.27 -2.2
723,475 - ABIE40_RS03660 0.27 -1.5
724,122 + ABIE40_RS03660 0.85 -1.9
724,122 + ABIE40_RS03660 0.85 -2.5
724,123 - ABIE40_RS03660 0.85 -3.4
724,123 - ABIE40_RS03660 0.85 -2.0
724,125 + ABIE40_RS03660 0.85 -4.4
724,126 - ABIE40_RS03660 0.85 -2.7
724,126 - ABIE40_RS03660 0.85 -2.6
724,127 + ABIE40_RS03660 0.85 -1.5
724,127 + ABIE40_RS03660 0.85 -1.9
724,128 - ABIE40_RS03660 0.85 -1.9
724,297 + -1.1
724,297 + -3.8
724,371 + ABIE40_RS03665 0.12 -1.5
724,372 - ABIE40_RS03665 0.12 -1.7
724,372 - ABIE40_RS03665 0.12 -3.3
724,372 - ABIE40_RS03665 0.12 -3.9
724,700 + ABIE40_RS03665 0.59 -0.9
724,701 - ABIE40_RS03665 0.59 -3.2
724,752 - ABIE40_RS03665 0.67 -2.6
724,752 - ABIE40_RS03665 0.67 -4.7
724,756 + ABIE40_RS03665 0.67 -2.5
724,756 + ABIE40_RS03665 0.67 -2.9
724,822 + ABIE40_RS03665 0.77 -0.1
725,040 + -1.0
725,040 + +0.0
725,040 + -0.1
725,041 - -0.8
725,041 - -0.4
725,041 - -0.6
725,041 - +0.0
725,063 - -0.6
725,063 - +0.5
725,069 + -0.4
725,070 - -0.2
725,079 + -0.2
725,079 + +0.0
725,080 - -0.3
725,080 - -0.7
725,080 - +0.2
725,080 - -0.2
725,130 + ABIE40_RS03670 0.16 -0.0
725,131 - ABIE40_RS03670 0.16 -0.4
725,131 - ABIE40_RS03670 0.16 -1.5
725,131 - ABIE40_RS03670 0.16 +0.8
725,131 - ABIE40_RS03670 0.16 +0.8
725,131 - ABIE40_RS03670 0.16 -1.1
725,131 - ABIE40_RS03670 0.16 -0.9
725,131 - ABIE40_RS03670 0.16 -3.2
725,137 + ABIE40_RS03670 0.18 -1.6
725,137 + ABIE40_RS03670 0.18 -1.5
725,137 + ABIE40_RS03670 0.18 -2.9
725,137 + ABIE40_RS03670 0.18 -0.9
725,138 - ABIE40_RS03670 0.18 -0.7
725,138 - ABIE40_RS03670 0.18 +0.2
725,138 - ABIE40_RS03670 0.18 +0.8
725,138 - ABIE40_RS03670 0.18 +0.3
725,138 - ABIE40_RS03670 0.18 +0.1
725,138 - ABIE40_RS03670 0.18 -0.0
725,138 - ABIE40_RS03670 0.18 -0.5
725,138 - ABIE40_RS03670 0.18 -0.3
725,138 - ABIE40_RS03670 0.18 -1.7
725,138 - ABIE40_RS03670 0.18 -0.5
725,212 + ABIE40_RS03670 0.35 +0.3

Or see this region's nucleotide sequence