Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS00340

Experiment: L-Lysine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS00335 and ABIE40_RS00340 are separated by 74 nucleotidesABIE40_RS00340 and ABIE40_RS00345 are separated by 14 nucleotides ABIE40_RS00335: ABIE40_RS00335 - translation initiation factor IF-2, at 67,361 to 70,057 _RS00335 ABIE40_RS00340: ABIE40_RS00340 - 30S ribosome-binding factor RbfA, at 70,132 to 70,536 _RS00340 ABIE40_RS00345: ABIE40_RS00345 - tRNA pseudouridine(55) synthase TruB, at 70,551 to 71,483 _RS00345 Position (kb) 70 71Strain fitness (log2 ratio) -2 -1 0 1 2at 70.071 kb on + strandat 70.096 kb on + strandat 70.096 kb on + strandat 70.097 kb on - strandat 70.420 kb on + strand, within ABIE40_RS00340at 70.420 kb on + strand, within ABIE40_RS00340at 70.420 kb on + strand, within ABIE40_RS00340at 70.420 kb on + strand, within ABIE40_RS00340at 70.420 kb on + strand, within ABIE40_RS00340at 70.421 kb on - strand, within ABIE40_RS00340at 70.450 kb on - strand, within ABIE40_RS00340at 70.450 kb on - strand, within ABIE40_RS00340at 70.465 kb on + strand, within ABIE40_RS00340at 70.537 kb on + strandat 70.537 kb on + strandat 70.538 kb on - strandat 70.755 kb on + strand, within ABIE40_RS00345at 70.755 kb on + strand, within ABIE40_RS00345at 70.755 kb on + strand, within ABIE40_RS00345at 70.755 kb on + strand, within ABIE40_RS00345at 70.755 kb on + strand, within ABIE40_RS00345at 70.756 kb on - strand, within ABIE40_RS00345at 70.756 kb on - strand, within ABIE40_RS00345at 70.756 kb on - strand, within ABIE40_RS00345at 70.756 kb on - strand, within ABIE40_RS00345at 70.756 kb on - strand, within ABIE40_RS00345at 70.756 kb on - strand, within ABIE40_RS00345at 70.896 kb on + strand, within ABIE40_RS00345at 70.962 kb on + strand, within ABIE40_RS00345at 70.962 kb on + strand, within ABIE40_RS00345at 70.963 kb on - strand, within ABIE40_RS00345at 71.091 kb on + strand, within ABIE40_RS00345at 71.091 kb on + strand, within ABIE40_RS00345at 71.091 kb on + strand, within ABIE40_RS00345at 71.091 kb on + strand, within ABIE40_RS00345at 71.091 kb on + strand, within ABIE40_RS00345at 71.091 kb on + strand, within ABIE40_RS00345at 71.092 kb on - strand, within ABIE40_RS00345at 71.092 kb on - strand, within ABIE40_RS00345at 71.092 kb on - strand, within ABIE40_RS00345at 71.092 kb on - strand, within ABIE40_RS00345at 71.092 kb on - strand, within ABIE40_RS00345at 71.092 kb on - strand, within ABIE40_RS00345at 71.136 kb on + strand, within ABIE40_RS00345at 71.136 kb on + strand, within ABIE40_RS00345at 71.137 kb on - strand, within ABIE40_RS00345at 71.144 kb on + strand, within ABIE40_RS00345at 71.144 kb on + strand, within ABIE40_RS00345at 71.145 kb on - strand, within ABIE40_RS00345

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lysine (C)
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70,071 + -0.0
70,096 + +1.8
70,096 + -1.1
70,097 - -1.2
70,420 + ABIE40_RS00340 0.71 -1.2
70,420 + ABIE40_RS00340 0.71 -2.7
70,420 + ABIE40_RS00340 0.71 -1.7
70,420 + ABIE40_RS00340 0.71 -1.8
70,420 + ABIE40_RS00340 0.71 -0.8
70,421 - ABIE40_RS00340 0.71 -1.6
70,450 - ABIE40_RS00340 0.79 -1.0
70,450 - ABIE40_RS00340 0.79 -1.4
70,465 + ABIE40_RS00340 0.82 -0.6
70,537 + -2.4
70,537 + +0.8
70,538 - +0.8
70,755 + ABIE40_RS00345 0.22 -1.1
70,755 + ABIE40_RS00345 0.22 +1.0
70,755 + ABIE40_RS00345 0.22 +0.5
70,755 + ABIE40_RS00345 0.22 +0.3
70,755 + ABIE40_RS00345 0.22 +0.1
70,756 - ABIE40_RS00345 0.22 +0.4
70,756 - ABIE40_RS00345 0.22 +0.5
70,756 - ABIE40_RS00345 0.22 +1.8
70,756 - ABIE40_RS00345 0.22 +0.9
70,756 - ABIE40_RS00345 0.22 +0.3
70,756 - ABIE40_RS00345 0.22 +1.3
70,896 + ABIE40_RS00345 0.37 +1.4
70,962 + ABIE40_RS00345 0.44 +0.9
70,962 + ABIE40_RS00345 0.44 +0.2
70,963 - ABIE40_RS00345 0.44 +0.9
71,091 + ABIE40_RS00345 0.58 +0.3
71,091 + ABIE40_RS00345 0.58 -0.1
71,091 + ABIE40_RS00345 0.58 +0.0
71,091 + ABIE40_RS00345 0.58 -1.0
71,091 + ABIE40_RS00345 0.58 +0.2
71,091 + ABIE40_RS00345 0.58 -0.7
71,092 - ABIE40_RS00345 0.58 +0.1
71,092 - ABIE40_RS00345 0.58 +1.2
71,092 - ABIE40_RS00345 0.58 +1.1
71,092 - ABIE40_RS00345 0.58 +1.4
71,092 - ABIE40_RS00345 0.58 +1.4
71,092 - ABIE40_RS00345 0.58 -1.7
71,136 + ABIE40_RS00345 0.63 -2.0
71,136 + ABIE40_RS00345 0.63 -1.7
71,137 - ABIE40_RS00345 0.63 +0.0
71,144 + ABIE40_RS00345 0.64 +1.6
71,144 + ABIE40_RS00345 0.64 -0.4
71,145 - ABIE40_RS00345 0.64 +0.5

Or see this region's nucleotide sequence