Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS27225 and ABID97_RS27230 are separated by 50 nucleotides ABID97_RS27230 and ABID97_RS27235 are separated by 87 nucleotides ABID97_RS27235 and ABID97_RS27240 are separated by 142 nucleotides ABID97_RS27240 and ABID97_RS27245 are separated by 136 nucleotides
ABID97_RS27225: ABID97_RS27225 - ester cyclase, at 361,928 to 362,347
_RS27225
ABID97_RS27230: ABID97_RS27230 - dihydrofolate reductase family protein, at 362,398 to 362,976
_RS27230
ABID97_RS27235: ABID97_RS27235 - hypothetical protein, at 363,064 to 363,306
_RS27235
ABID97_RS27240: ABID97_RS27240 - hypothetical protein, at 363,449 to 363,802
_RS27240
ABID97_RS27245: ABID97_RS27245 - DUF6228 family protein, at 363,939 to 364,358
_RS27245
Position (kb) 363
364 Strain fitness (log2 ratio) -1
0
1 at 362.075 kb on + strand, within ABID97_RS27225 at 362.858 kb on - strand, within ABID97_RS27230 at 362.977 kb on + strand at 363.249 kb on + strand, within ABID97_RS27235 at 363.664 kb on - strand, within ABID97_RS27240 at 364.026 kb on + strand, within ABID97_RS27245 at 364.027 kb on - strand, within ABID97_RS27245 at 364.027 kb on - strand, within ABID97_RS27245 at 364.263 kb on + strand, within ABID97_RS27245 at 364.264 kb on - strand, within ABID97_RS27245
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 362,075 + ABID97_RS27225 0.35 -0.0 362,858 - ABID97_RS27230 0.79 +1.5 362,977 + -0.4 363,249 + ABID97_RS27235 0.76 -1.2 363,664 - ABID97_RS27240 0.61 +1.6 364,026 + ABID97_RS27245 0.21 +0.8 364,027 - ABID97_RS27245 0.21 +1.1 364,027 - ABID97_RS27245 0.21 +1.5 364,263 + ABID97_RS27245 0.77 -0.3 364,264 - ABID97_RS27245 0.77 -0.3
Or see this region's nucleotide sequence