Strain Fitness in Variovorax sp. OAS795 around ABID97_RS25895

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS25890 and ABID97_RS25895 overlap by 1 nucleotidesABID97_RS25895 and ABID97_RS25900 are separated by 10 nucleotides ABID97_RS25890: ABID97_RS25890 - ABC transporter ATP-binding protein, at 99,732 to 101,387 _RS25890 ABID97_RS25895: ABID97_RS25895 - ABC transporter permease, at 101,387 to 102,292 _RS25895 ABID97_RS25900: ABID97_RS25900 - ABC transporter permease, at 102,303 to 103,259 _RS25900 Position (kb) 101 102 103Strain fitness (log2 ratio) -3 -2 -1 0 1at 100.651 kb on + strand, within ABID97_RS25890at 100.771 kb on + strand, within ABID97_RS25890at 101.119 kb on + strand, within ABID97_RS25890at 101.119 kb on + strand, within ABID97_RS25890at 101.120 kb on - strand, within ABID97_RS25890at 101.679 kb on + strand, within ABID97_RS25895at 101.778 kb on + strand, within ABID97_RS25895at 101.779 kb on - strand, within ABID97_RS25895at 102.461 kb on - strand, within ABID97_RS25900at 102.461 kb on - strand, within ABID97_RS25900

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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100,651 + ABID97_RS25890 0.55 +0.2
100,771 + ABID97_RS25890 0.63 +0.6
101,119 + ABID97_RS25890 0.84 -0.3
101,119 + ABID97_RS25890 0.84 -0.4
101,120 - ABID97_RS25890 0.84 -0.7
101,679 + ABID97_RS25895 0.32 -0.5
101,778 + ABID97_RS25895 0.43 -0.3
101,779 - ABID97_RS25895 0.43 +1.1
102,461 - ABID97_RS25900 0.17 +0.6
102,461 - ABID97_RS25900 0.17 -2.9

Or see this region's nucleotide sequence