Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS24495 and ABID97_RS24500 are separated by 26 nucleotides ABID97_RS24500 and ABID97_RS24505 are separated by 156 nucleotides ABID97_RS24505 and ABID97_RS24510 are separated by 18 nucleotides
ABID97_RS24495: ABID97_RS24495 - formyl-CoA transferase, at 5,070,256 to 5,071,527
_RS24495
ABID97_RS24500: ABID97_RS24500 - oxalyl-CoA decarboxylase, at 5,071,554 to 5,073,389
_RS24500
ABID97_RS24505: ABID97_RS24505 - Crp/Fnr family transcriptional regulator, at 5,073,546 to 5,074,154
_RS24505
ABID97_RS24510: ABID97_RS24510 - cytidylate kinase family protein, at 5,074,173 to 5,075,009
_RS24510
Position (kb) 5071
5072
5073
5074 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5070.623 kb on + strand, within ABID97_RS24495 at 5070.623 kb on + strand, within ABID97_RS24495 at 5070.623 kb on + strand, within ABID97_RS24495 at 5070.701 kb on + strand, within ABID97_RS24495 at 5070.702 kb on - strand, within ABID97_RS24495 at 5070.702 kb on - strand, within ABID97_RS24495 at 5070.702 kb on - strand, within ABID97_RS24495 at 5070.707 kb on + strand, within ABID97_RS24495 at 5070.707 kb on + strand, within ABID97_RS24495 at 5070.827 kb on + strand, within ABID97_RS24495 at 5070.828 kb on - strand, within ABID97_RS24495 at 5070.837 kb on - strand, within ABID97_RS24495 at 5070.837 kb on - strand, within ABID97_RS24495 at 5071.127 kb on + strand, within ABID97_RS24495 at 5071.350 kb on - strand, within ABID97_RS24495 at 5071.350 kb on - strand, within ABID97_RS24495 at 5071.533 kb on + strand at 5071.533 kb on + strand at 5072.029 kb on + strand, within ABID97_RS24500 at 5072.029 kb on + strand, within ABID97_RS24500 at 5072.030 kb on - strand, within ABID97_RS24500 at 5072.470 kb on + strand, within ABID97_RS24500 at 5072.470 kb on + strand, within ABID97_RS24500 at 5072.470 kb on + strand, within ABID97_RS24500 at 5072.470 kb on + strand, within ABID97_RS24500 at 5072.470 kb on + strand, within ABID97_RS24500 at 5072.471 kb on - strand, within ABID97_RS24500 at 5072.542 kb on + strand, within ABID97_RS24500 at 5072.779 kb on + strand, within ABID97_RS24500 at 5073.378 kb on + strand at 5073.378 kb on + strand at 5073.378 kb on + strand at 5073.436 kb on + strand at 5073.723 kb on + strand, within ABID97_RS24505 at 5073.723 kb on + strand, within ABID97_RS24505 at 5073.723 kb on + strand, within ABID97_RS24505 at 5073.724 kb on - strand, within ABID97_RS24505 at 5073.822 kb on + strand, within ABID97_RS24505 at 5073.823 kb on - strand, within ABID97_RS24505 at 5073.823 kb on - strand, within ABID97_RS24505 at 5073.823 kb on - strand, within ABID97_RS24505 at 5073.956 kb on - strand, within ABID97_RS24505 at 5073.957 kb on + strand, within ABID97_RS24505 at 5073.957 kb on + strand, within ABID97_RS24505 at 5074.099 kb on - strand at 5074.165 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 5,070,623 + ABID97_RS24495 0.29 -0.8 5,070,623 + ABID97_RS24495 0.29 +0.7 5,070,623 + ABID97_RS24495 0.29 -0.2 5,070,701 + ABID97_RS24495 0.35 -0.0 5,070,702 - ABID97_RS24495 0.35 +0.1 5,070,702 - ABID97_RS24495 0.35 +0.1 5,070,702 - ABID97_RS24495 0.35 +0.4 5,070,707 + ABID97_RS24495 0.35 -0.4 5,070,707 + ABID97_RS24495 0.35 -1.3 5,070,827 + ABID97_RS24495 0.45 -0.2 5,070,828 - ABID97_RS24495 0.45 +0.4 5,070,837 - ABID97_RS24495 0.46 -0.0 5,070,837 - ABID97_RS24495 0.46 +0.0 5,071,127 + ABID97_RS24495 0.68 -0.7 5,071,350 - ABID97_RS24495 0.86 -0.2 5,071,350 - ABID97_RS24495 0.86 -0.1 5,071,533 + +0.4 5,071,533 + +0.6 5,072,029 + ABID97_RS24500 0.26 -2.3 5,072,029 + ABID97_RS24500 0.26 -2.5 5,072,030 - ABID97_RS24500 0.26 -2.8 5,072,470 + ABID97_RS24500 0.50 -1.1 5,072,470 + ABID97_RS24500 0.50 -3.5 5,072,470 + ABID97_RS24500 0.50 -1.6 5,072,470 + ABID97_RS24500 0.50 -2.0 5,072,470 + ABID97_RS24500 0.50 -0.7 5,072,471 - ABID97_RS24500 0.50 -2.9 5,072,542 + ABID97_RS24500 0.54 -2.4 5,072,779 + ABID97_RS24500 0.67 -2.0 5,073,378 + -1.4 5,073,378 + -2.8 5,073,378 + -3.7 5,073,436 + -3.6 5,073,723 + ABID97_RS24505 0.29 +0.4 5,073,723 + ABID97_RS24505 0.29 +1.3 5,073,723 + ABID97_RS24505 0.29 +0.2 5,073,724 - ABID97_RS24505 0.29 -0.1 5,073,822 + ABID97_RS24505 0.45 -0.1 5,073,823 - ABID97_RS24505 0.45 +0.3 5,073,823 - ABID97_RS24505 0.45 +0.6 5,073,823 - ABID97_RS24505 0.45 -0.2 5,073,956 - ABID97_RS24505 0.67 +1.7 5,073,957 + ABID97_RS24505 0.67 -0.1 5,073,957 + ABID97_RS24505 0.67 -0.3 5,074,099 - +0.1 5,074,165 + +0.1
Or see this region's nucleotide sequence