Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS22750 and ABID97_RS22755 are separated by 143 nucleotides ABID97_RS22755 and ABID97_RS22760 overlap by 19 nucleotides ABID97_RS22760 and ABID97_RS22765 are separated by 66 nucleotides ABID97_RS22765 and ABID97_RS22770 are separated by 150 nucleotides
ABID97_RS22750: ABID97_RS22750 - TetR/AcrR family transcriptional regulator, at 4,712,512 to 4,713,108
_RS22750
ABID97_RS22755: ABID97_RS22755 - SDR family NAD(P)-dependent oxidoreductase, at 4,713,252 to 4,714,055
_RS22755
ABID97_RS22760: ABID97_RS22760 - TetR/AcrR family transcriptional regulator, at 4,714,037 to 4,714,702
_RS22760
ABID97_RS22765: ABID97_RS22765 - phenylacetic acid degradation protein PaaY, at 4,714,769 to 4,715,371
_RS22765
ABID97_RS22770: ABID97_RS22770 - enoyl-CoA hydratase-related protein, at 4,715,522 to 4,716,325
_RS22770
Position (kb) 4714
4715 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 4713.118 kb on + strand at 4713.717 kb on + strand, within ABID97_RS22755 at 4713.717 kb on + strand, within ABID97_RS22755 at 4714.038 kb on + strand at 4714.425 kb on + strand, within ABID97_RS22760 at 4714.557 kb on + strand, within ABID97_RS22760 at 4714.558 kb on - strand, within ABID97_RS22760 at 4714.677 kb on + strand at 4714.677 kb on + strand at 4714.678 kb on - strand at 4714.897 kb on - strand, within ABID97_RS22765 at 4715.265 kb on + strand, within ABID97_RS22765 at 4715.319 kb on + strand at 4715.320 kb on - strand at 4715.361 kb on + strand at 4715.361 kb on + strand at 4715.362 kb on - strand at 4715.362 kb on - strand at 4715.683 kb on + strand, within ABID97_RS22770 at 4715.684 kb on - strand, within ABID97_RS22770 at 4715.684 kb on - strand, within ABID97_RS22770
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 4,713,118 + +0.3 4,713,717 + ABID97_RS22755 0.58 -0.1 4,713,717 + ABID97_RS22755 0.58 -0.3 4,714,038 + -0.2 4,714,425 + ABID97_RS22760 0.58 -2.6 4,714,557 + ABID97_RS22760 0.78 -2.4 4,714,558 - ABID97_RS22760 0.78 -4.0 4,714,677 + -3.2 4,714,677 + -2.8 4,714,678 - -2.6 4,714,897 - ABID97_RS22765 0.21 +0.4 4,715,265 + ABID97_RS22765 0.82 +0.3 4,715,319 + -0.6 4,715,320 - +0.1 4,715,361 + +0.5 4,715,361 + -0.2 4,715,362 - +0.9 4,715,362 - +0.5 4,715,683 + ABID97_RS22770 0.20 -0.8 4,715,684 - ABID97_RS22770 0.20 +0.2 4,715,684 - ABID97_RS22770 0.20 -1.7
Or see this region's nucleotide sequence