Strain Fitness in Variovorax sp. OAS795 around ABID97_RS22175

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS22170 and ABID97_RS22175 are separated by 144 nucleotidesABID97_RS22175 and ABID97_RS22180 are separated by 172 nucleotides ABID97_RS22170: ABID97_RS22170 - magnesium-translocating P-type ATPase, at 4,591,306 to 4,594,029 _RS22170 ABID97_RS22175: ABID97_RS22175 - NAD-dependent succinate-semialdehyde dehydrogenase, at 4,594,174 to 4,595,616 _RS22175 ABID97_RS22180: ABID97_RS22180 - glycerate kinase, at 4,595,789 to 4,597,129 _RS22180 Position (kb) 4594 4595 4596Strain fitness (log2 ratio) -3 -2 -1 0 1at 4593.424 kb on + strand, within ABID97_RS22170at 4593.424 kb on + strand, within ABID97_RS22170at 4593.541 kb on + strand, within ABID97_RS22170at 4593.541 kb on + strand, within ABID97_RS22170at 4593.542 kb on - strand, within ABID97_RS22170at 4593.907 kb on + strandat 4593.907 kb on + strandat 4593.908 kb on - strandat 4594.003 kb on + strandat 4594.004 kb on - strandat 4594.211 kb on + strandat 4594.211 kb on + strandat 4594.212 kb on - strandat 4594.248 kb on - strandat 4594.691 kb on + strand, within ABID97_RS22175at 4594.691 kb on + strand, within ABID97_RS22175at 4594.692 kb on - strand, within ABID97_RS22175at 4594.692 kb on - strand, within ABID97_RS22175at 4594.970 kb on + strand, within ABID97_RS22175at 4594.974 kb on + strand, within ABID97_RS22175at 4594.975 kb on - strand, within ABID97_RS22175at 4595.603 kb on + strandat 4595.603 kb on + strandat 4595.732 kb on + strandat 4595.733 kb on - strandat 4595.733 kb on - strandat 4595.733 kb on - strandat 4595.733 kb on - strandat 4595.733 kb on - strandat 4595.733 kb on - strandat 4595.872 kb on - strandat 4596.212 kb on + strand, within ABID97_RS22180at 4596.424 kb on - strand, within ABID97_RS22180

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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4,593,424 + ABID97_RS22170 0.78 +0.5
4,593,424 + ABID97_RS22170 0.78 +0.8
4,593,541 + ABID97_RS22170 0.82 +0.2
4,593,541 + ABID97_RS22170 0.82 -0.4
4,593,542 - ABID97_RS22170 0.82 -0.0
4,593,907 + -0.9
4,593,907 + -1.7
4,593,908 - -0.8
4,594,003 + -0.0
4,594,004 - +0.6
4,594,211 + -2.0
4,594,211 + -3.1
4,594,212 - -2.4
4,594,248 - -2.5
4,594,691 + ABID97_RS22175 0.36 -1.6
4,594,691 + ABID97_RS22175 0.36 -1.4
4,594,692 - ABID97_RS22175 0.36 -3.2
4,594,692 - ABID97_RS22175 0.36 -1.1
4,594,970 + ABID97_RS22175 0.55 -2.5
4,594,974 + ABID97_RS22175 0.55 -1.8
4,594,975 - ABID97_RS22175 0.56 -1.4
4,595,603 + -2.6
4,595,603 + -1.4
4,595,732 + +0.1
4,595,733 - +0.3
4,595,733 - +0.2
4,595,733 - +0.3
4,595,733 - -1.1
4,595,733 - -0.2
4,595,733 - +0.0
4,595,872 - +1.2
4,596,212 + ABID97_RS22180 0.32 +0.1
4,596,424 - ABID97_RS22180 0.47 +0.0

Or see this region's nucleotide sequence