Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS21940 and ABID97_RS21945 are separated by 9 nucleotides ABID97_RS21945 and ABID97_RS21950 are separated by 23 nucleotides ABID97_RS21950 and ABID97_RS21955 are separated by 6 nucleotides
ABID97_RS21940: ABID97_RS21940 - protein kinase family protein, at 4,538,580 to 4,539,557
_RS21940
ABID97_RS21945: ABID97_RS21945 - hemolysin family protein, at 4,539,567 to 4,540,877
_RS21945
ABID97_RS21950: ABID97_RS21950 - symmetrical bis(5'-nucleosyl)-tetraphosphatase, at 4,540,901 to 4,541,752
_RS21950
ABID97_RS21955: ABID97_RS21955 - GNAT family protein, at 4,541,759 to 4,542,475
_RS21955
Position (kb) 4539
4540
4541 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4539.099 kb on + strand, within ABID97_RS21940 at 4539.163 kb on + strand, within ABID97_RS21940 at 4539.163 kb on + strand, within ABID97_RS21940 at 4539.164 kb on - strand, within ABID97_RS21940 at 4539.164 kb on - strand, within ABID97_RS21940 at 4539.164 kb on - strand, within ABID97_RS21940 at 4539.472 kb on + strand at 4539.472 kb on + strand at 4539.569 kb on - strand at 4539.731 kb on - strand, within ABID97_RS21945 at 4539.731 kb on - strand, within ABID97_RS21945 at 4539.731 kb on - strand, within ABID97_RS21945 at 4540.721 kb on + strand, within ABID97_RS21945 at 4540.721 kb on + strand, within ABID97_RS21945 at 4540.722 kb on - strand, within ABID97_RS21945 at 4540.722 kb on - strand, within ABID97_RS21945 at 4540.910 kb on + strand at 4540.910 kb on + strand at 4540.910 kb on + strand at 4541.064 kb on - strand, within ABID97_RS21950 at 4541.372 kb on + strand, within ABID97_RS21950 at 4541.372 kb on + strand, within ABID97_RS21950 at 4541.372 kb on + strand, within ABID97_RS21950 at 4541.373 kb on - strand, within ABID97_RS21950
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 4,539,099 + ABID97_RS21940 0.53 +0.0 4,539,163 + ABID97_RS21940 0.60 +0.1 4,539,163 + ABID97_RS21940 0.60 +0.3 4,539,164 - ABID97_RS21940 0.60 -0.0 4,539,164 - ABID97_RS21940 0.60 -0.1 4,539,164 - ABID97_RS21940 0.60 +0.0 4,539,472 + +0.4 4,539,472 + -0.6 4,539,569 - +0.2 4,539,731 - ABID97_RS21945 0.13 -1.2 4,539,731 - ABID97_RS21945 0.13 -2.1 4,539,731 - ABID97_RS21945 0.13 -0.8 4,540,721 + ABID97_RS21945 0.88 -2.8 4,540,721 + ABID97_RS21945 0.88 +0.5 4,540,722 - ABID97_RS21945 0.88 -1.0 4,540,722 - ABID97_RS21945 0.88 -3.2 4,540,910 + -0.1 4,540,910 + -0.1 4,540,910 + -1.1 4,541,064 - ABID97_RS21950 0.19 +1.8 4,541,372 + ABID97_RS21950 0.55 -0.3 4,541,372 + ABID97_RS21950 0.55 -0.6 4,541,372 + ABID97_RS21950 0.55 -0.9 4,541,373 - ABID97_RS21950 0.55 +0.7
Or see this region's nucleotide sequence