Strain Fitness in Variovorax sp. OAS795 around ABID97_RS21180

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS21175 and ABID97_RS21180 are separated by 26 nucleotidesABID97_RS21180 and ABID97_RS21185 are separated by 19 nucleotidesABID97_RS21185 and ABID97_RS21190 overlap by 4 nucleotides ABID97_RS21175: ABID97_RS21175 - endonuclease/exonuclease/phosphatase family protein, at 4,371,552 to 4,372,565 _RS21175 ABID97_RS21180: ABID97_RS21180 - sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC, at 4,372,592 to 4,373,659 _RS21180 ABID97_RS21185: ABID97_RS21185 - carbohydrate ABC transporter permease, at 4,373,679 to 4,374,530 _RS21185 ABID97_RS21190: ABID97_RS21190 - sugar ABC transporter permease, at 4,374,527 to 4,375,402 _RS21190 Position (kb) 4372 4373 4374Strain fitness (log2 ratio) -3 -2 -1 0 1at 4371.634 kb on - strandat 4371.636 kb on + strandat 4371.637 kb on - strandat 4371.637 kb on - strandat 4371.670 kb on - strand, within ABID97_RS21175at 4371.792 kb on + strand, within ABID97_RS21175at 4371.793 kb on - strand, within ABID97_RS21175at 4371.793 kb on - strand, within ABID97_RS21175at 4372.287 kb on + strand, within ABID97_RS21175at 4372.369 kb on - strand, within ABID97_RS21175at 4372.369 kb on - strand, within ABID97_RS21175at 4372.586 kb on + strandat 4372.828 kb on - strand, within ABID97_RS21180at 4372.996 kb on - strand, within ABID97_RS21180at 4372.996 kb on - strand, within ABID97_RS21180at 4373.095 kb on - strand, within ABID97_RS21180at 4373.095 kb on - strand, within ABID97_RS21180at 4373.162 kb on - strand, within ABID97_RS21180at 4373.409 kb on + strand, within ABID97_RS21180at 4373.409 kb on + strand, within ABID97_RS21180at 4373.410 kb on - strand, within ABID97_RS21180at 4373.664 kb on - strandat 4373.719 kb on + strandat 4373.719 kb on + strandat 4373.720 kb on - strandat 4373.737 kb on + strandat 4373.738 kb on - strandat 4373.761 kb on + strandat 4373.876 kb on - strand, within ABID97_RS21185at 4373.909 kb on - strand, within ABID97_RS21185at 4373.909 kb on - strand, within ABID97_RS21185at 4374.115 kb on + strand, within ABID97_RS21185at 4374.115 kb on + strand, within ABID97_RS21185at 4374.133 kb on + strand, within ABID97_RS21185at 4374.133 kb on + strand, within ABID97_RS21185at 4374.134 kb on - strand, within ABID97_RS21185at 4374.134 kb on - strand, within ABID97_RS21185at 4374.325 kb on + strand, within ABID97_RS21185at 4374.326 kb on - strand, within ABID97_RS21185at 4374.555 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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4,371,634 - +0.5
4,371,636 + -3.3
4,371,637 - -1.1
4,371,637 - +0.5
4,371,670 - ABID97_RS21175 0.12 +1.1
4,371,792 + ABID97_RS21175 0.24 -0.2
4,371,793 - ABID97_RS21175 0.24 +0.2
4,371,793 - ABID97_RS21175 0.24 +0.1
4,372,287 + ABID97_RS21175 0.72 -1.0
4,372,369 - ABID97_RS21175 0.81 -0.3
4,372,369 - ABID97_RS21175 0.81 +1.0
4,372,586 + -0.0
4,372,828 - ABID97_RS21180 0.22 -1.9
4,372,996 - ABID97_RS21180 0.38 -2.3
4,372,996 - ABID97_RS21180 0.38 -1.7
4,373,095 - ABID97_RS21180 0.47 -1.7
4,373,095 - ABID97_RS21180 0.47 -2.5
4,373,162 - ABID97_RS21180 0.53 -2.2
4,373,409 + ABID97_RS21180 0.76 -1.6
4,373,409 + ABID97_RS21180 0.76 -1.3
4,373,410 - ABID97_RS21180 0.77 -1.5
4,373,664 - -1.4
4,373,719 + -3.3
4,373,719 + -1.5
4,373,720 - -2.4
4,373,737 + -1.8
4,373,738 - -1.3
4,373,761 + -3.6
4,373,876 - ABID97_RS21185 0.23 -2.0
4,373,909 - ABID97_RS21185 0.27 -2.6
4,373,909 - ABID97_RS21185 0.27 -1.9
4,374,115 + ABID97_RS21185 0.51 -1.5
4,374,115 + ABID97_RS21185 0.51 -2.0
4,374,133 + ABID97_RS21185 0.53 -1.7
4,374,133 + ABID97_RS21185 0.53 -2.0
4,374,134 - ABID97_RS21185 0.53 -2.7
4,374,134 - ABID97_RS21185 0.53 -3.5
4,374,325 + ABID97_RS21185 0.76 -2.6
4,374,326 - ABID97_RS21185 0.76 -2.9
4,374,555 + -1.7

Or see this region's nucleotide sequence