Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS21175 and ABID97_RS21180 are separated by 26 nucleotides ABID97_RS21180 and ABID97_RS21185 are separated by 19 nucleotides ABID97_RS21185 and ABID97_RS21190 overlap by 4 nucleotides
ABID97_RS21175: ABID97_RS21175 - endonuclease/exonuclease/phosphatase family protein, at 4,371,552 to 4,372,565
_RS21175
ABID97_RS21180: ABID97_RS21180 - sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC, at 4,372,592 to 4,373,659
_RS21180
ABID97_RS21185: ABID97_RS21185 - carbohydrate ABC transporter permease, at 4,373,679 to 4,374,530
_RS21185
ABID97_RS21190: ABID97_RS21190 - sugar ABC transporter permease, at 4,374,527 to 4,375,402
_RS21190
Position (kb)
4372
4373
4374 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4371.634 kb on - strand at 4371.636 kb on + strand at 4371.637 kb on - strand at 4371.637 kb on - strand at 4371.670 kb on - strand, within ABID97_RS21175 at 4371.792 kb on + strand, within ABID97_RS21175 at 4371.793 kb on - strand, within ABID97_RS21175 at 4371.793 kb on - strand, within ABID97_RS21175 at 4372.287 kb on + strand, within ABID97_RS21175 at 4372.369 kb on - strand, within ABID97_RS21175 at 4372.369 kb on - strand, within ABID97_RS21175 at 4372.586 kb on + strand at 4372.828 kb on - strand, within ABID97_RS21180 at 4372.996 kb on - strand, within ABID97_RS21180 at 4372.996 kb on - strand, within ABID97_RS21180 at 4373.095 kb on - strand, within ABID97_RS21180 at 4373.095 kb on - strand, within ABID97_RS21180 at 4373.162 kb on - strand, within ABID97_RS21180 at 4373.409 kb on + strand, within ABID97_RS21180 at 4373.409 kb on + strand, within ABID97_RS21180 at 4373.410 kb on - strand, within ABID97_RS21180 at 4373.664 kb on - strand at 4373.719 kb on + strand at 4373.719 kb on + strand at 4373.720 kb on - strand at 4373.737 kb on + strand at 4373.738 kb on - strand at 4373.761 kb on + strand at 4373.876 kb on - strand, within ABID97_RS21185 at 4373.909 kb on - strand, within ABID97_RS21185 at 4373.909 kb on - strand, within ABID97_RS21185 at 4374.115 kb on + strand, within ABID97_RS21185 at 4374.115 kb on + strand, within ABID97_RS21185 at 4374.133 kb on + strand, within ABID97_RS21185 at 4374.133 kb on + strand, within ABID97_RS21185 at 4374.134 kb on - strand, within ABID97_RS21185 at 4374.134 kb on - strand, within ABID97_RS21185 at 4374.325 kb on + strand, within ABID97_RS21185 at 4374.326 kb on - strand, within ABID97_RS21185 at 4374.555 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 4,371,634 - +0.5 4,371,636 + -3.3 4,371,637 - -1.1 4,371,637 - +0.5 4,371,670 - ABID97_RS21175 0.12 +1.1 4,371,792 + ABID97_RS21175 0.24 -0.2 4,371,793 - ABID97_RS21175 0.24 +0.2 4,371,793 - ABID97_RS21175 0.24 +0.1 4,372,287 + ABID97_RS21175 0.72 -1.0 4,372,369 - ABID97_RS21175 0.81 -0.3 4,372,369 - ABID97_RS21175 0.81 +1.0 4,372,586 + -0.0 4,372,828 - ABID97_RS21180 0.22 -1.9 4,372,996 - ABID97_RS21180 0.38 -2.3 4,372,996 - ABID97_RS21180 0.38 -1.7 4,373,095 - ABID97_RS21180 0.47 -1.7 4,373,095 - ABID97_RS21180 0.47 -2.5 4,373,162 - ABID97_RS21180 0.53 -2.2 4,373,409 + ABID97_RS21180 0.76 -1.6 4,373,409 + ABID97_RS21180 0.76 -1.3 4,373,410 - ABID97_RS21180 0.77 -1.5 4,373,664 - -1.4 4,373,719 + -3.3 4,373,719 + -1.5 4,373,720 - -2.4 4,373,737 + -1.8 4,373,738 - -1.3 4,373,761 + -3.6 4,373,876 - ABID97_RS21185 0.23 -2.0 4,373,909 - ABID97_RS21185 0.27 -2.6 4,373,909 - ABID97_RS21185 0.27 -1.9 4,374,115 + ABID97_RS21185 0.51 -1.5 4,374,115 + ABID97_RS21185 0.51 -2.0 4,374,133 + ABID97_RS21185 0.53 -1.7 4,374,133 + ABID97_RS21185 0.53 -2.0 4,374,134 - ABID97_RS21185 0.53 -2.7 4,374,134 - ABID97_RS21185 0.53 -3.5 4,374,325 + ABID97_RS21185 0.76 -2.6 4,374,326 - ABID97_RS21185 0.76 -2.9 4,374,555 + -1.7
Or see this region's nucleotide sequence