Strain Fitness in Variovorax sp. OAS795 around ABID97_RS14890

Experiment: D-Xylose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS14885 and ABID97_RS14890 are separated by 103 nucleotidesABID97_RS14890 and ABID97_RS14895 are separated by 45 nucleotides ABID97_RS14885: ABID97_RS14885 - acetolactate synthase 3 catalytic subunit, at 3,091,047 to 3,092,831 _RS14885 ABID97_RS14890: ABID97_RS14890 - acetolactate synthase small subunit, at 3,092,935 to 3,093,426 _RS14890 ABID97_RS14895: ABID97_RS14895 - ketol-acid reductoisomerase, at 3,093,472 to 3,094,488 _RS14895 Position (kb) 3092 3093 3094Strain fitness (log2 ratio) -2 -1 0 1at 3092.868 kb on + strandat 3092.869 kb on - strandat 3093.017 kb on - strand, within ABID97_RS14890at 3093.175 kb on + strand, within ABID97_RS14890at 3093.292 kb on + strand, within ABID97_RS14890at 3093.292 kb on + strand, within ABID97_RS14890at 3093.292 kb on + strand, within ABID97_RS14890at 3093.292 kb on + strand, within ABID97_RS14890at 3093.292 kb on + strand, within ABID97_RS14890

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
remove
3,092,868 + -0.3
3,092,869 - -0.4
3,093,017 - ABID97_RS14890 0.17 -0.5
3,093,175 + ABID97_RS14890 0.49 -2.7
3,093,292 + ABID97_RS14890 0.73 -0.4
3,093,292 + ABID97_RS14890 0.73 -1.6
3,093,292 + ABID97_RS14890 0.73 -2.5
3,093,292 + ABID97_RS14890 0.73 -0.7
3,093,292 + ABID97_RS14890 0.73 -2.1

Or see this region's nucleotide sequence