Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS13560 and ABID97_RS13565 overlap by 4 nucleotides ABID97_RS13565 and ABID97_RS13570 are separated by 73 nucleotides ABID97_RS13570 and ABID97_RS13575 are separated by 115 nucleotides
ABID97_RS13560: ABID97_RS13560 - ATP-binding cassette domain-containing protein, at 2,826,076 to 2,826,837
_RS13560
ABID97_RS13565: ABID97_RS13565 - ABC transporter ATP-binding protein, at 2,826,834 to 2,827,550
_RS13565
ABID97_RS13570: ABID97_RS13570 - IclR family transcriptional regulator, at 2,827,624 to 2,828,337
_RS13570
ABID97_RS13575: ABID97_RS13575 - ATP-binding protein, at 2,828,453 to 2,829,793
_RS13575
Position (kb)
2827
2828
2829 Strain fitness (log2 ratio)
-2
-1
0
1 at 2826.817 kb on + strand at 2827.444 kb on - strand, within ABID97_RS13565 at 2827.444 kb on - strand, within ABID97_RS13565 at 2827.444 kb on - strand, within ABID97_RS13565 at 2827.738 kb on + strand, within ABID97_RS13570 at 2827.853 kb on - strand, within ABID97_RS13570 at 2827.918 kb on + strand, within ABID97_RS13570 at 2827.937 kb on - strand, within ABID97_RS13570 at 2828.391 kb on - strand at 2829.094 kb on - strand, within ABID97_RS13575 at 2829.094 kb on - strand, within ABID97_RS13575
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 2,826,817 + +0.5 2,827,444 - ABID97_RS13565 0.85 -0.5 2,827,444 - ABID97_RS13565 0.85 -0.6 2,827,444 - ABID97_RS13565 0.85 -0.1 2,827,738 + ABID97_RS13570 0.16 -1.7 2,827,853 - ABID97_RS13570 0.32 -1.3 2,827,918 + ABID97_RS13570 0.41 -1.2 2,827,937 - ABID97_RS13570 0.44 -1.8 2,828,391 - +0.4 2,829,094 - ABID97_RS13575 0.48 +1.2 2,829,094 - ABID97_RS13575 0.48 -0.3
Or see this region's nucleotide sequence