Strain Fitness in Variovorax sp. OAS795 around ABID97_RS13060

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS13055 and ABID97_RS13060 are separated by 40 nucleotidesABID97_RS13060 and ABID97_RS13065 are separated by 376 nucleotides ABID97_RS13055: ABID97_RS13055 - serine hydrolase domain-containing protein, at 2,714,211 to 2,716,067 _RS13055 ABID97_RS13060: ABID97_RS13060 - serine hydrolase domain-containing protein, at 2,716,108 to 2,717,292 _RS13060 ABID97_RS13065: ABID97_RS13065 - helix-turn-helix domain-containing protein, at 2,717,669 to 2,718,676 _RS13065 Position (kb) 2716 2717 2718Strain fitness (log2 ratio) -1 0 1at 2715.341 kb on - strand, within ABID97_RS13055at 2715.656 kb on - strand, within ABID97_RS13055at 2716.503 kb on - strand, within ABID97_RS13060at 2716.803 kb on - strand, within ABID97_RS13060at 2717.411 kb on + strandat 2717.505 kb on - strandat 2717.557 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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2,715,341 - ABID97_RS13055 0.61 +0.9
2,715,656 - ABID97_RS13055 0.78 -0.7
2,716,503 - ABID97_RS13060 0.33 -0.8
2,716,803 - ABID97_RS13060 0.59 -1.3
2,717,411 + -0.0
2,717,505 - +0.4
2,717,557 - -1.5

Or see this region's nucleotide sequence