Strain Fitness in Variovorax sp. OAS795 around ABID97_RS09965

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS09960 and ABID97_RS09965 are separated by 14 nucleotidesABID97_RS09965 and ABID97_RS09970 are separated by 20 nucleotides ABID97_RS09960: ABID97_RS09960 - aldehyde dehydrogenase family protein, at 2,069,711 to 2,071,147 _RS09960 ABID97_RS09965: ABID97_RS09965 - dihydrodipicolinate synthase family protein, at 2,071,162 to 2,072,091 _RS09965 ABID97_RS09970: ABID97_RS09970 - altronate dehydratase family protein, at 2,072,112 to 2,073,653 _RS09970 Position (kb) 2071 2072 2073Strain fitness (log2 ratio) -1 0 1at 2071.361 kb on + strand, within ABID97_RS09965at 2071.362 kb on - strand, within ABID97_RS09965at 2071.706 kb on + strand, within ABID97_RS09965at 2071.706 kb on + strand, within ABID97_RS09965at 2071.706 kb on + strand, within ABID97_RS09965at 2071.755 kb on - strand, within ABID97_RS09965at 2072.353 kb on + strand, within ABID97_RS09970at 2072.353 kb on + strand, within ABID97_RS09970at 2072.488 kb on + strand, within ABID97_RS09970at 2072.489 kb on - strand, within ABID97_RS09970at 2072.620 kb on + strand, within ABID97_RS09970at 2072.620 kb on + strand, within ABID97_RS09970at 2072.707 kb on + strand, within ABID97_RS09970at 2072.707 kb on + strand, within ABID97_RS09970at 2072.707 kb on + strand, within ABID97_RS09970

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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2,071,361 + ABID97_RS09965 0.21 +0.6
2,071,362 - ABID97_RS09965 0.22 +0.0
2,071,706 + ABID97_RS09965 0.58 -0.0
2,071,706 + ABID97_RS09965 0.58 -0.1
2,071,706 + ABID97_RS09965 0.58 -0.5
2,071,755 - ABID97_RS09965 0.64 -1.4
2,072,353 + ABID97_RS09970 0.16 +0.0
2,072,353 + ABID97_RS09970 0.16 -0.3
2,072,488 + ABID97_RS09970 0.24 +0.1
2,072,489 - ABID97_RS09970 0.24 -0.5
2,072,620 + ABID97_RS09970 0.33 -1.5
2,072,620 + ABID97_RS09970 0.33 -0.7
2,072,707 + ABID97_RS09970 0.39 +0.1
2,072,707 + ABID97_RS09970 0.39 +0.3
2,072,707 + ABID97_RS09970 0.39 -0.5

Or see this region's nucleotide sequence