Strain Fitness in Variovorax sp. OAS795 around ABID97_RS08365

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS08355 and ABID97_RS08360 are separated by 31 nucleotidesABID97_RS08360 and ABID97_RS08365 are separated by 17 nucleotidesABID97_RS08365 and ABID97_RS08370 are separated by 19 nucleotidesABID97_RS08370 and ABID97_RS08375 are separated by 1 nucleotides ABID97_RS08355: ABID97_RS08355 - signal peptidase I, at 1,757,010 to 1,757,975 _RS08355 ABID97_RS08360: ABID97_RS08360 - DUF4845 domain-containing protein, at 1,758,007 to 1,758,375 _RS08360 ABID97_RS08365: ABID97_RS08365 - ribonuclease III, at 1,758,393 to 1,759,079 _RS08365 ABID97_RS08370: ABID97_RS08370 - GTPase Era, at 1,759,099 to 1,760,052 _RS08370 ABID97_RS08375: ABID97_RS08375 - DNA repair protein RecO, at 1,760,054 to 1,760,827 _RS08375 Position (kb) 1758 1759 1760Strain fitness (log2 ratio) -3 -2 -1 0 1at 1758.143 kb on - strand, within ABID97_RS08360at 1758.301 kb on + strand, within ABID97_RS08360at 1758.301 kb on + strand, within ABID97_RS08360at 1758.301 kb on + strand, within ABID97_RS08360at 1758.302 kb on - strand, within ABID97_RS08360at 1758.302 kb on - strand, within ABID97_RS08360at 1758.302 kb on - strand, within ABID97_RS08360at 1758.307 kb on + strand, within ABID97_RS08360at 1758.355 kb on + strandat 1758.355 kb on + strandat 1758.355 kb on + strandat 1758.356 kb on - strandat 1758.356 kb on - strandat 1758.558 kb on + strand, within ABID97_RS08365at 1758.558 kb on + strand, within ABID97_RS08365at 1758.558 kb on + strand, within ABID97_RS08365at 1758.559 kb on - strand, within ABID97_RS08365at 1758.808 kb on - strand, within ABID97_RS08365at 1758.909 kb on + strand, within ABID97_RS08365at 1758.909 kb on + strand, within ABID97_RS08365

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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1,758,143 - ABID97_RS08360 0.37 -0.5
1,758,301 + ABID97_RS08360 0.80 -0.2
1,758,301 + ABID97_RS08360 0.80 -0.4
1,758,301 + ABID97_RS08360 0.80 -0.5
1,758,302 - ABID97_RS08360 0.80 -0.3
1,758,302 - ABID97_RS08360 0.80 -0.1
1,758,302 - ABID97_RS08360 0.80 -0.9
1,758,307 + ABID97_RS08360 0.81 -0.2
1,758,355 + -1.5
1,758,355 + -0.8
1,758,355 + -1.7
1,758,356 - -0.2
1,758,356 - -0.4
1,758,558 + ABID97_RS08365 0.24 -0.3
1,758,558 + ABID97_RS08365 0.24 -1.0
1,758,558 + ABID97_RS08365 0.24 -3.1
1,758,559 - ABID97_RS08365 0.24 -0.3
1,758,808 - ABID97_RS08365 0.60 -0.9
1,758,909 + ABID97_RS08365 0.75 -0.0
1,758,909 + ABID97_RS08365 0.75 -0.8

Or see this region's nucleotide sequence