Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS07250 and ABID97_RS07255 are separated by 155 nucleotides ABID97_RS07255 and ABID97_RS07260 are separated by 34 nucleotides ABID97_RS07260 and ABID97_RS07265 are separated by 48 nucleotides ABID97_RS07265 and ABID97_RS07270 overlap by 4 nucleotides
ABID97_RS07250: ABID97_RS07250 - DUF971 domain-containing protein, at 1,539,006 to 1,539,422
_RS07250
ABID97_RS07255: ABID97_RS07255 - bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE, at 1,539,578 to 1,540,309
_RS07255
ABID97_RS07260: ABID97_RS07260 - TIM44-like domain-containing protein, at 1,540,344 to 1,541,369
_RS07260
ABID97_RS07265: ABID97_RS07265 - hypothetical protein, at 1,541,418 to 1,541,987
_RS07265
ABID97_RS07270: ABID97_RS07270 - ubiquinone biosynthesis regulatory protein kinase UbiB, at 1,541,984 to 1,543,549
_RS07270
Position (kb)
1540
1541
1542 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1539.565 kb on + strand at 1539.569 kb on - strand at 1540.329 kb on + strand at 1540.329 kb on + strand at 1540.330 kb on - strand at 1540.804 kb on - strand, within ABID97_RS07260 at 1540.804 kb on - strand, within ABID97_RS07260 at 1541.226 kb on + strand, within ABID97_RS07260 at 1541.226 kb on + strand, within ABID97_RS07260 at 1541.226 kb on + strand, within ABID97_RS07260 at 1541.227 kb on - strand, within ABID97_RS07260 at 1541.227 kb on - strand, within ABID97_RS07260 at 1541.227 kb on - strand, within ABID97_RS07260 at 1541.227 kb on - strand, within ABID97_RS07260 at 1541.367 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 1,539,565 + -0.2 1,539,569 - -0.4 1,540,329 + -0.3 1,540,329 + +0.3 1,540,330 - +0.4 1,540,804 - ABID97_RS07260 0.45 -0.6 1,540,804 - ABID97_RS07260 0.45 -0.5 1,541,226 + ABID97_RS07260 0.86 -0.0 1,541,226 + ABID97_RS07260 0.86 -1.0 1,541,226 + ABID97_RS07260 0.86 -1.2 1,541,227 - ABID97_RS07260 0.86 -3.2 1,541,227 - ABID97_RS07260 0.86 -1.4 1,541,227 - ABID97_RS07260 0.86 -0.4 1,541,227 - ABID97_RS07260 0.86 -1.3 1,541,367 + -0.4
Or see this region's nucleotide sequence