Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS07145 and ABID97_RS07150 are separated by 14 nucleotides ABID97_RS07150 and ABID97_RS07155 are separated by 16 nucleotides ABID97_RS07155 and ABID97_RS07160 are separated by 53 nucleotides
ABID97_RS07145: ABID97_RS07145 - carbohydrate kinase, at 1,513,841 to 1,514,809
_RS07145
ABID97_RS07150: ABID97_RS07150 - AraC family transcriptional regulator, at 1,514,824 to 1,515,762
_RS07150
ABID97_RS07155: ABID97_RS07155 - xylulokinase, at 1,515,779 to 1,517,263
_RS07155
ABID97_RS07160: ABID97_RS07160 - chaperonin GroEL, at 1,517,317 to 1,518,969
_RS07160
Position (kb)
1515
1516
1517
1518 Strain fitness (log2 ratio)
-1
0
1 at 1514.995 kb on + strand, within ABID97_RS07150 at 1514.995 kb on + strand, within ABID97_RS07150 at 1514.996 kb on - strand, within ABID97_RS07150 at 1515.637 kb on + strand, within ABID97_RS07150 at 1515.637 kb on + strand, within ABID97_RS07150 at 1515.637 kb on + strand, within ABID97_RS07150 at 1515.637 kb on + strand, within ABID97_RS07150 at 1515.638 kb on - strand, within ABID97_RS07150 at 1515.638 kb on - strand, within ABID97_RS07150 at 1515.655 kb on + strand, within ABID97_RS07150 at 1515.782 kb on + strand at 1515.782 kb on + strand at 1515.782 kb on + strand at 1515.783 kb on - strand at 1515.783 kb on - strand at 1515.783 kb on - strand at 1516.790 kb on + strand, within ABID97_RS07155 at 1516.790 kb on + strand, within ABID97_RS07155 at 1516.790 kb on + strand, within ABID97_RS07155 at 1516.790 kb on + strand, within ABID97_RS07155 at 1516.883 kb on + strand, within ABID97_RS07155 at 1516.883 kb on + strand, within ABID97_RS07155 at 1516.884 kb on - strand, within ABID97_RS07155 at 1517.049 kb on - strand, within ABID97_RS07155 at 1517.219 kb on + strand at 1517.220 kb on - strand at 1517.220 kb on - strand at 1517.220 kb on - strand at 1517.318 kb on + strand at 1517.318 kb on + strand at 1517.318 kb on + strand at 1517.318 kb on + strand at 1517.318 kb on + strand at 1517.318 kb on + strand at 1517.318 kb on + strand at 1517.318 kb on + strand at 1517.318 kb on + strand at 1517.319 kb on - strand at 1517.319 kb on - strand at 1517.319 kb on - strand at 1517.319 kb on - strand at 1517.319 kb on - strand at 1517.319 kb on - strand at 1517.319 kb on - strand at 1517.319 kb on - strand at 1517.319 kb on - strand at 1517.319 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 1,514,995 + ABID97_RS07150 0.18 +0.7 1,514,995 + ABID97_RS07150 0.18 +0.0 1,514,996 - ABID97_RS07150 0.18 +0.8 1,515,637 + ABID97_RS07150 0.87 +0.2 1,515,637 + ABID97_RS07150 0.87 +0.2 1,515,637 + ABID97_RS07150 0.87 -0.2 1,515,637 + ABID97_RS07150 0.87 +0.4 1,515,638 - ABID97_RS07150 0.87 +0.8 1,515,638 - ABID97_RS07150 0.87 +0.0 1,515,655 + ABID97_RS07150 0.88 +0.1 1,515,782 + +0.1 1,515,782 + -0.2 1,515,782 + +0.2 1,515,783 - +0.3 1,515,783 - -0.6 1,515,783 - +0.3 1,516,790 + ABID97_RS07155 0.68 +0.0 1,516,790 + ABID97_RS07155 0.68 +0.3 1,516,790 + ABID97_RS07155 0.68 +0.2 1,516,790 + ABID97_RS07155 0.68 +1.6 1,516,883 + ABID97_RS07155 0.74 +0.2 1,516,883 + ABID97_RS07155 0.74 +0.0 1,516,884 - ABID97_RS07155 0.74 -0.2 1,517,049 - ABID97_RS07155 0.86 -0.4 1,517,219 + -0.2 1,517,220 - +0.4 1,517,220 - -0.1 1,517,220 - +0.2 1,517,318 + -0.0 1,517,318 + +0.5 1,517,318 + -0.4 1,517,318 + +0.5 1,517,318 + +1.6 1,517,318 + +0.3 1,517,318 + -0.8 1,517,318 + +0.1 1,517,318 + +0.3 1,517,319 - -0.6 1,517,319 - +0.0 1,517,319 - +0.0 1,517,319 - +0.6 1,517,319 - -0.4 1,517,319 - -0.2 1,517,319 - +0.3 1,517,319 - +0.1 1,517,319 - -0.1 1,517,319 - +0.1
Or see this region's nucleotide sequence