Strain Fitness in Variovorax sp. OAS795 around ABID97_RS06855

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS06850 and ABID97_RS06855 are separated by 4 nucleotidesABID97_RS06855 and ABID97_RS06860 are separated by 181 nucleotides ABID97_RS06850: ABID97_RS06850 - multiple monosaccharide ABC transporter permease, at 1,445,767 to 1,446,990 _RS06850 ABID97_RS06855: ABID97_RS06855 - sugar ABC transporter ATP-binding protein, at 1,446,995 to 1,448,515 _RS06855 ABID97_RS06860: ABID97_RS06860 - ABC transporter permease, at 1,448,697 to 1,449,743 _RS06860 Position (kb) 1446 1447 1448 1449Strain fitness (log2 ratio) -1 0 1at 1446.091 kb on + strand, within ABID97_RS06850at 1446.451 kb on + strand, within ABID97_RS06850at 1446.509 kb on - strand, within ABID97_RS06850at 1446.524 kb on - strand, within ABID97_RS06850at 1446.574 kb on + strand, within ABID97_RS06850at 1446.891 kb on + strandat 1446.892 kb on - strandat 1446.988 kb on + strandat 1446.988 kb on + strandat 1446.988 kb on + strandat 1447.442 kb on + strand, within ABID97_RS06855at 1447.631 kb on + strand, within ABID97_RS06855at 1447.632 kb on - strand, within ABID97_RS06855at 1448.838 kb on + strand, within ABID97_RS06860at 1449.192 kb on + strand, within ABID97_RS06860at 1449.192 kb on + strand, within ABID97_RS06860at 1449.193 kb on - strand, within ABID97_RS06860at 1449.280 kb on - strand, within ABID97_RS06860at 1449.390 kb on + strand, within ABID97_RS06860at 1449.390 kb on + strand, within ABID97_RS06860

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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1,446,091 + ABID97_RS06850 0.26 -0.4
1,446,451 + ABID97_RS06850 0.56 +0.9
1,446,509 - ABID97_RS06850 0.61 -0.3
1,446,524 - ABID97_RS06850 0.62 +0.0
1,446,574 + ABID97_RS06850 0.66 -0.3
1,446,891 + +0.0
1,446,892 - -0.4
1,446,988 + +0.4
1,446,988 + +0.6
1,446,988 + -0.5
1,447,442 + ABID97_RS06855 0.29 +0.2
1,447,631 + ABID97_RS06855 0.42 -0.7
1,447,632 - ABID97_RS06855 0.42 -0.3
1,448,838 + ABID97_RS06860 0.13 -0.8
1,449,192 + ABID97_RS06860 0.47 -0.1
1,449,192 + ABID97_RS06860 0.47 +0.4
1,449,193 - ABID97_RS06860 0.47 +0.1
1,449,280 - ABID97_RS06860 0.56 -0.2
1,449,390 + ABID97_RS06860 0.66 +0.1
1,449,390 + ABID97_RS06860 0.66 +1.5

Or see this region's nucleotide sequence