Strain Fitness in Variovorax sp. OAS795 around ABID97_RS06815

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS06810 and ABID97_RS06815 are separated by 35 nucleotidesABID97_RS06815 and ABID97_RS06820 are separated by 135 nucleotidesABID97_RS06820 and ABID97_RS06825 are separated by 0 nucleotides ABID97_RS06810: ABID97_RS06810 - DUF2235 domain-containing protein, at 1,435,673 to 1,437,619 _RS06810 ABID97_RS06815: ABID97_RS06815 - SMP-30/gluconolactonase/LRE family protein, at 1,437,655 to 1,438,617 _RS06815 ABID97_RS06820: ABID97_RS06820 - SDR family oxidoreductase, at 1,438,753 to 1,439,529 _RS06820 ABID97_RS06825: ABID97_RS06825 - LysR family transcriptional regulator, at 1,439,530 to 1,440,489 _RS06825 Position (kb) 1437 1438 1439Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1436.949 kb on - strand, within ABID97_RS06810at 1436.949 kb on - strand, within ABID97_RS06810at 1436.969 kb on + strand, within ABID97_RS06810at 1436.969 kb on + strand, within ABID97_RS06810at 1436.969 kb on + strand, within ABID97_RS06810at 1437.260 kb on + strand, within ABID97_RS06810at 1437.261 kb on - strand, within ABID97_RS06810at 1437.261 kb on - strand, within ABID97_RS06810at 1437.261 kb on - strand, within ABID97_RS06810at 1437.392 kb on + strand, within ABID97_RS06810at 1437.392 kb on + strand, within ABID97_RS06810at 1437.393 kb on - strand, within ABID97_RS06810at 1437.800 kb on + strand, within ABID97_RS06815at 1437.800 kb on + strand, within ABID97_RS06815at 1437.801 kb on - strand, within ABID97_RS06815at 1438.080 kb on - strand, within ABID97_RS06815at 1438.080 kb on - strand, within ABID97_RS06815at 1438.173 kb on - strand, within ABID97_RS06815at 1438.173 kb on - strand, within ABID97_RS06815at 1438.479 kb on - strand, within ABID97_RS06815at 1438.661 kb on - strandat 1438.661 kb on - strandat 1438.878 kb on - strand, within ABID97_RS06820at 1439.101 kb on + strand, within ABID97_RS06820at 1439.101 kb on + strand, within ABID97_RS06820at 1439.102 kb on - strand, within ABID97_RS06820at 1439.246 kb on - strand, within ABID97_RS06820at 1439.246 kb on - strand, within ABID97_RS06820at 1439.555 kb on + strandat 1439.556 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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1,436,949 - ABID97_RS06810 0.66 +0.2
1,436,949 - ABID97_RS06810 0.66 -0.4
1,436,969 + ABID97_RS06810 0.67 -0.0
1,436,969 + ABID97_RS06810 0.67 +0.1
1,436,969 + ABID97_RS06810 0.67 -0.5
1,437,260 + ABID97_RS06810 0.82 -0.1
1,437,261 - ABID97_RS06810 0.82 +0.3
1,437,261 - ABID97_RS06810 0.82 -0.3
1,437,261 - ABID97_RS06810 0.82 -0.1
1,437,392 + ABID97_RS06810 0.88 -0.2
1,437,392 + ABID97_RS06810 0.88 +0.1
1,437,393 - ABID97_RS06810 0.88 -0.2
1,437,800 + ABID97_RS06815 0.15 -3.4
1,437,800 + ABID97_RS06815 0.15 -3.3
1,437,801 - ABID97_RS06815 0.15 -2.5
1,438,080 - ABID97_RS06815 0.44 -3.4
1,438,080 - ABID97_RS06815 0.44 -2.2
1,438,173 - ABID97_RS06815 0.54 -1.2
1,438,173 - ABID97_RS06815 0.54 -1.8
1,438,479 - ABID97_RS06815 0.86 -4.3
1,438,661 - +0.9
1,438,661 - -0.2
1,438,878 - ABID97_RS06820 0.16 -0.5
1,439,101 + ABID97_RS06820 0.45 +0.0
1,439,101 + ABID97_RS06820 0.45 +0.1
1,439,102 - ABID97_RS06820 0.45 +0.1
1,439,246 - ABID97_RS06820 0.63 -2.2
1,439,246 - ABID97_RS06820 0.63 -0.3
1,439,555 + +1.6
1,439,556 - +0.7

Or see this region's nucleotide sequence