Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS04815 and ABID97_RS04820 are separated by 176 nucleotides ABID97_RS04820 and ABID97_RS04825 overlap by 4 nucleotides ABID97_RS04825 and ABID97_RS04830 overlap by 4 nucleotides
ABID97_RS04815: ABID97_RS04815 - surface-adhesin E family protein, at 1,004,185 to 1,004,589
_RS04815
ABID97_RS04820: ABID97_RS04820 - putative toxin-antitoxin system toxin component, PIN family, at 1,004,766 to 1,005,170
_RS04820
ABID97_RS04825: ABID97_RS04825 - hypothetical protein, at 1,005,167 to 1,006,078
_RS04825
ABID97_RS04830: ABID97_RS04830 - FMN-binding glutamate synthase family protein, at 1,006,075 to 1,007,772
_RS04830
Position (kb) 1005
1006
1007 Strain fitness (log2 ratio) -2
-1
0
1 at 1004.186 kb on + strand at 1004.187 kb on - strand at 1004.187 kb on - strand at 1004.187 kb on - strand at 1004.330 kb on + strand, within ABID97_RS04815 at 1004.331 kb on - strand, within ABID97_RS04815 at 1004.331 kb on - strand, within ABID97_RS04815 at 1004.346 kb on - strand, within ABID97_RS04815 at 1004.504 kb on + strand, within ABID97_RS04815 at 1004.504 kb on + strand, within ABID97_RS04815 at 1004.504 kb on + strand, within ABID97_RS04815 at 1004.504 kb on + strand, within ABID97_RS04815 at 1004.504 kb on + strand, within ABID97_RS04815 at 1004.504 kb on + strand, within ABID97_RS04815 at 1004.504 kb on + strand, within ABID97_RS04815 at 1004.504 kb on + strand, within ABID97_RS04815 at 1004.504 kb on + strand, within ABID97_RS04815 at 1004.505 kb on - strand, within ABID97_RS04815 at 1004.505 kb on - strand, within ABID97_RS04815 at 1004.505 kb on - strand, within ABID97_RS04815 at 1004.505 kb on - strand, within ABID97_RS04815 at 1004.505 kb on - strand, within ABID97_RS04815 at 1004.505 kb on - strand, within ABID97_RS04815 at 1004.505 kb on - strand, within ABID97_RS04815 at 1004.505 kb on - strand, within ABID97_RS04815 at 1004.505 kb on - strand, within ABID97_RS04815 at 1004.705 kb on + strand at 1004.706 kb on - strand at 1004.706 kb on - strand at 1004.911 kb on - strand, within ABID97_RS04820 at 1005.169 kb on - strand at 1005.411 kb on + strand, within ABID97_RS04825 at 1005.412 kb on - strand, within ABID97_RS04825 at 1005.483 kb on + strand, within ABID97_RS04825 at 1005.972 kb on + strand, within ABID97_RS04825 at 1005.972 kb on + strand, within ABID97_RS04825 at 1005.972 kb on + strand, within ABID97_RS04825 at 1005.972 kb on + strand, within ABID97_RS04825 at 1005.973 kb on - strand, within ABID97_RS04825 at 1005.973 kb on - strand, within ABID97_RS04825 at 1005.973 kb on - strand, within ABID97_RS04825 at 1006.160 kb on + strand at 1006.161 kb on - strand at 1006.161 kb on - strand at 1006.161 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 1,004,186 + -0.1 1,004,187 - -0.5 1,004,187 - -0.2 1,004,187 - -0.4 1,004,330 + ABID97_RS04815 0.36 -0.6 1,004,331 - ABID97_RS04815 0.36 +0.3 1,004,331 - ABID97_RS04815 0.36 +0.5 1,004,346 - ABID97_RS04815 0.40 +0.7 1,004,504 + ABID97_RS04815 0.79 -0.4 1,004,504 + ABID97_RS04815 0.79 -0.1 1,004,504 + ABID97_RS04815 0.79 +0.1 1,004,504 + ABID97_RS04815 0.79 +1.0 1,004,504 + ABID97_RS04815 0.79 -0.7 1,004,504 + ABID97_RS04815 0.79 -0.6 1,004,504 + ABID97_RS04815 0.79 +1.7 1,004,504 + ABID97_RS04815 0.79 +0.0 1,004,504 + ABID97_RS04815 0.79 +0.1 1,004,505 - ABID97_RS04815 0.79 -0.1 1,004,505 - ABID97_RS04815 0.79 +0.1 1,004,505 - ABID97_RS04815 0.79 -0.0 1,004,505 - ABID97_RS04815 0.79 +0.7 1,004,505 - ABID97_RS04815 0.79 +0.6 1,004,505 - ABID97_RS04815 0.79 +1.0 1,004,505 - ABID97_RS04815 0.79 +0.1 1,004,505 - ABID97_RS04815 0.79 +0.3 1,004,505 - ABID97_RS04815 0.79 +0.2 1,004,705 + -0.6 1,004,706 - -1.3 1,004,706 - +0.4 1,004,911 - ABID97_RS04820 0.36 -0.5 1,005,169 - +0.5 1,005,411 + ABID97_RS04825 0.27 -2.4 1,005,412 - ABID97_RS04825 0.27 -1.0 1,005,483 + ABID97_RS04825 0.35 -1.0 1,005,972 + ABID97_RS04825 0.88 -0.1 1,005,972 + ABID97_RS04825 0.88 -1.3 1,005,972 + ABID97_RS04825 0.88 -1.0 1,005,972 + ABID97_RS04825 0.88 -0.6 1,005,973 - ABID97_RS04825 0.88 +0.2 1,005,973 - ABID97_RS04825 0.88 -1.4 1,005,973 - ABID97_RS04825 0.88 -1.0 1,006,160 + -0.4 1,006,161 - -0.3 1,006,161 - +0.1 1,006,161 - +0.5
Or see this region's nucleotide sequence