Strain Fitness in Variovorax sp. OAS795 around ABID97_RS04610

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS04605 and ABID97_RS04610 are separated by 178 nucleotidesABID97_RS04610 and ABID97_RS04615 are separated by 20 nucleotidesABID97_RS04615 and ABID97_RS04620 are separated by 10 nucleotides ABID97_RS04605: ABID97_RS04605 - glutamate--cysteine ligase, at 959,176 to 960,483 _RS04605 ABID97_RS04610: ABID97_RS04610 - potassium transporter Kup, at 960,662 to 962,533 _RS04610 ABID97_RS04615: ABID97_RS04615 - polysaccharide deacetylase family protein, at 962,554 to 963,477 _RS04615 ABID97_RS04620: ABID97_RS04620 - nuclear transport factor 2 family protein, at 963,488 to 963,925 _RS04620 Position (kb) 960 961 962 963Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 959.752 kb on + strand, within ABID97_RS04605at 959.752 kb on + strand, within ABID97_RS04605at 959.752 kb on + strand, within ABID97_RS04605at 959.753 kb on - strand, within ABID97_RS04605at 959.753 kb on - strand, within ABID97_RS04605at 959.753 kb on - strand, within ABID97_RS04605at 959.815 kb on + strand, within ABID97_RS04605at 959.815 kb on + strand, within ABID97_RS04605at 959.816 kb on - strand, within ABID97_RS04605at 959.816 kb on - strand, within ABID97_RS04605at 959.881 kb on + strand, within ABID97_RS04605at 959.881 kb on + strand, within ABID97_RS04605at 959.881 kb on + strand, within ABID97_RS04605at 959.882 kb on - strand, within ABID97_RS04605at 959.882 kb on - strand, within ABID97_RS04605at 959.882 kb on - strand, within ABID97_RS04605at 959.882 kb on - strand, within ABID97_RS04605at 959.882 kb on - strand, within ABID97_RS04605at 959.977 kb on + strand, within ABID97_RS04605at 959.977 kb on + strand, within ABID97_RS04605at 959.977 kb on + strand, within ABID97_RS04605at 959.978 kb on - strand, within ABID97_RS04605at 959.986 kb on + strand, within ABID97_RS04605at 960.223 kb on + strand, within ABID97_RS04605at 960.223 kb on + strand, within ABID97_RS04605at 960.223 kb on + strand, within ABID97_RS04605at 960.223 kb on + strand, within ABID97_RS04605at 960.223 kb on + strand, within ABID97_RS04605at 960.224 kb on - strand, within ABID97_RS04605at 960.224 kb on - strand, within ABID97_RS04605at 960.394 kb on + strandat 960.394 kb on + strandat 960.394 kb on + strandat 960.394 kb on + strandat 960.394 kb on + strandat 960.395 kb on - strandat 960.395 kb on - strandat 960.395 kb on - strandat 960.395 kb on - strandat 960.400 kb on + strandat 960.401 kb on - strandat 960.401 kb on - strandat 960.401 kb on - strandat 960.439 kb on + strandat 960.439 kb on + strandat 960.439 kb on + strandat 960.440 kb on - strandat 960.440 kb on - strandat 960.440 kb on - strandat 960.440 kb on - strandat 960.526 kb on + strandat 960.526 kb on + strandat 960.723 kb on - strandat 960.749 kb on + strandat 960.749 kb on + strandat 960.749 kb on + strandat 960.749 kb on + strandat 960.749 kb on + strandat 960.860 kb on + strand, within ABID97_RS04610at 960.860 kb on + strand, within ABID97_RS04610at 960.860 kb on + strand, within ABID97_RS04610at 960.861 kb on - strand, within ABID97_RS04610at 960.861 kb on - strand, within ABID97_RS04610at 960.861 kb on - strand, within ABID97_RS04610at 960.861 kb on - strand, within ABID97_RS04610at 961.005 kb on - strand, within ABID97_RS04610at 961.005 kb on - strand, within ABID97_RS04610at 961.088 kb on + strand, within ABID97_RS04610at 961.089 kb on - strand, within ABID97_RS04610at 961.089 kb on - strand, within ABID97_RS04610at 961.439 kb on + strand, within ABID97_RS04610at 961.676 kb on + strand, within ABID97_RS04610at 961.677 kb on - strand, within ABID97_RS04610at 961.763 kb on + strand, within ABID97_RS04610at 961.763 kb on + strand, within ABID97_RS04610at 962.369 kb on + strandat 962.369 kb on + strandat 962.370 kb on - strandat 962.370 kb on - strandat 962.392 kb on + strandat 962.711 kb on + strand, within ABID97_RS04615at 962.711 kb on + strand, within ABID97_RS04615at 962.711 kb on + strand, within ABID97_RS04615at 962.712 kb on - strand, within ABID97_RS04615at 962.712 kb on - strand, within ABID97_RS04615at 962.937 kb on - strand, within ABID97_RS04615at 962.942 kb on + strand, within ABID97_RS04615at 963.176 kb on + strand, within ABID97_RS04615at 963.368 kb on + strand, within ABID97_RS04615at 963.368 kb on + strand, within ABID97_RS04615at 963.368 kb on + strand, within ABID97_RS04615at 963.368 kb on + strand, within ABID97_RS04615at 963.369 kb on - strand, within ABID97_RS04615at 963.402 kb on - strandat 963.428 kb on + strandat 963.429 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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959,752 + ABID97_RS04605 0.44 +0.1
959,752 + ABID97_RS04605 0.44 +0.5
959,752 + ABID97_RS04605 0.44 -0.2
959,753 - ABID97_RS04605 0.44 +0.1
959,753 - ABID97_RS04605 0.44 -1.1
959,753 - ABID97_RS04605 0.44 -0.2
959,815 + ABID97_RS04605 0.49 -0.0
959,815 + ABID97_RS04605 0.49 -0.1
959,816 - ABID97_RS04605 0.49 +0.8
959,816 - ABID97_RS04605 0.49 +0.3
959,881 + ABID97_RS04605 0.54 -0.6
959,881 + ABID97_RS04605 0.54 +0.2
959,881 + ABID97_RS04605 0.54 +0.4
959,882 - ABID97_RS04605 0.54 +0.5
959,882 - ABID97_RS04605 0.54 -0.8
959,882 - ABID97_RS04605 0.54 -0.5
959,882 - ABID97_RS04605 0.54 -0.3
959,882 - ABID97_RS04605 0.54 -1.1
959,977 + ABID97_RS04605 0.61 -0.4
959,977 + ABID97_RS04605 0.61 +0.1
959,977 + ABID97_RS04605 0.61 -1.3
959,978 - ABID97_RS04605 0.61 -0.6
959,986 + ABID97_RS04605 0.62 +0.2
960,223 + ABID97_RS04605 0.80 -0.8
960,223 + ABID97_RS04605 0.80 +0.0
960,223 + ABID97_RS04605 0.80 +0.4
960,223 + ABID97_RS04605 0.80 -0.9
960,223 + ABID97_RS04605 0.80 +0.2
960,224 - ABID97_RS04605 0.80 -0.3
960,224 - ABID97_RS04605 0.80 -0.1
960,394 + +0.1
960,394 + +0.2
960,394 + -0.6
960,394 + +0.8
960,394 + -0.2
960,395 - -0.2
960,395 - +0.5
960,395 - +0.1
960,395 - -0.0
960,400 + +0.5
960,401 - -0.4
960,401 - -0.7
960,401 - +0.6
960,439 + -0.3
960,439 + +0.2
960,439 + -0.1
960,440 - -0.1
960,440 - +0.5
960,440 - +1.1
960,440 - +0.9
960,526 + -0.3
960,526 + -0.6
960,723 - -0.8
960,749 + -3.8
960,749 + -0.8
960,749 + -0.3
960,749 + -1.4
960,749 + -1.8
960,860 + ABID97_RS04610 0.11 -1.8
960,860 + ABID97_RS04610 0.11 -1.6
960,860 + ABID97_RS04610 0.11 -2.9
960,861 - ABID97_RS04610 0.11 -0.9
960,861 - ABID97_RS04610 0.11 +0.7
960,861 - ABID97_RS04610 0.11 -2.0
960,861 - ABID97_RS04610 0.11 -2.5
961,005 - ABID97_RS04610 0.18 -1.9
961,005 - ABID97_RS04610 0.18 -1.5
961,088 + ABID97_RS04610 0.23 -1.9
961,089 - ABID97_RS04610 0.23 -2.0
961,089 - ABID97_RS04610 0.23 -0.7
961,439 + ABID97_RS04610 0.42 -1.0
961,676 + ABID97_RS04610 0.54 +0.7
961,677 - ABID97_RS04610 0.54 -3.7
961,763 + ABID97_RS04610 0.59 -2.0
961,763 + ABID97_RS04610 0.59 -1.9
962,369 + -1.7
962,369 + -1.7
962,370 - -1.0
962,370 - -1.6
962,392 + -1.7
962,711 + ABID97_RS04615 0.17 +0.4
962,711 + ABID97_RS04615 0.17 +0.5
962,711 + ABID97_RS04615 0.17 -0.3
962,712 - ABID97_RS04615 0.17 +0.2
962,712 - ABID97_RS04615 0.17 -0.5
962,937 - ABID97_RS04615 0.41 +0.3
962,942 + ABID97_RS04615 0.42 -0.0
963,176 + ABID97_RS04615 0.67 -0.2
963,368 + ABID97_RS04615 0.88 -0.2
963,368 + ABID97_RS04615 0.88 -0.2
963,368 + ABID97_RS04615 0.88 +1.0
963,368 + ABID97_RS04615 0.88 -0.1
963,369 - ABID97_RS04615 0.88 +1.1
963,402 - +0.0
963,428 + -0.6
963,429 - +0.8

Or see this region's nucleotide sequence