Strain Fitness in Variovorax sp. OAS795 around ABID97_RS03430

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS03425 and ABID97_RS03430 are separated by 29 nucleotidesABID97_RS03430 and ABID97_RS03435 are separated by 22 nucleotides ABID97_RS03425: ABID97_RS03425 - urocanate hydratase, at 696,045 to 697,763 _RS03425 ABID97_RS03430: ABID97_RS03430 - HutD family protein, at 697,793 to 698,365 _RS03430 ABID97_RS03435: ABID97_RS03435 - imidazolonepropionase, at 698,388 to 699,614 _RS03435 Position (kb) 697 698 699Strain fitness (log2 ratio) -1 0 1at 696.907 kb on - strand, within ABID97_RS03425at 697.212 kb on + strand, within ABID97_RS03425at 697.212 kb on + strand, within ABID97_RS03425at 697.212 kb on + strand, within ABID97_RS03425at 697.212 kb on + strand, within ABID97_RS03425at 697.213 kb on - strand, within ABID97_RS03425at 697.213 kb on - strand, within ABID97_RS03425at 698.662 kb on - strand, within ABID97_RS03435at 698.662 kb on - strand, within ABID97_RS03435at 698.662 kb on - strand, within ABID97_RS03435at 698.950 kb on - strand, within ABID97_RS03435at 699.255 kb on + strand, within ABID97_RS03435at 699.255 kb on + strand, within ABID97_RS03435at 699.255 kb on + strand, within ABID97_RS03435at 699.255 kb on + strand, within ABID97_RS03435at 699.256 kb on - strand, within ABID97_RS03435

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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696,907 - ABID97_RS03425 0.50 +0.6
697,212 + ABID97_RS03425 0.68 -0.4
697,212 + ABID97_RS03425 0.68 +0.4
697,212 + ABID97_RS03425 0.68 +1.0
697,212 + ABID97_RS03425 0.68 +1.7
697,213 - ABID97_RS03425 0.68 -0.5
697,213 - ABID97_RS03425 0.68 +0.4
698,662 - ABID97_RS03435 0.22 -0.1
698,662 - ABID97_RS03435 0.22 +0.8
698,662 - ABID97_RS03435 0.22 +0.3
698,950 - ABID97_RS03435 0.46 -0.1
699,255 + ABID97_RS03435 0.71 +0.3
699,255 + ABID97_RS03435 0.71 -0.1
699,255 + ABID97_RS03435 0.71 +0.4
699,255 + ABID97_RS03435 0.71 -0.5
699,256 - ABID97_RS03435 0.71 +0.7

Or see this region's nucleotide sequence