Strain Fitness in Variovorax sp. OAS795 around ABID97_RS03290

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS03280 and ABID97_RS03285 are separated by 40 nucleotidesABID97_RS03285 and ABID97_RS03290 are separated by 90 nucleotidesABID97_RS03290 and ABID97_RS03295 are separated by 15 nucleotidesABID97_RS03295 and ABID97_RS03300 are separated by 56 nucleotides ABID97_RS03280: ABID97_RS03280 - hypothetical protein, at 663,372 to 664,613 _RS03280 ABID97_RS03285: ABID97_RS03285 - DUF1127 domain-containing protein, at 664,654 to 664,848 _RS03285 ABID97_RS03290: ABID97_RS03290 - LysR family transcriptional regulator, at 664,939 to 665,829 _RS03290 ABID97_RS03295: ABID97_RS03295 - hypothetical protein, at 665,845 to 666,345 _RS03295 ABID97_RS03300: ABID97_RS03300 - glutaminase, at 666,402 to 667,340 _RS03300 Position (kb) 664 665 666Strain fitness (log2 ratio) -2 -1 0 1 2at 664.894 kb on + strandat 664.895 kb on - strandat 665.170 kb on - strand, within ABID97_RS03290at 665.545 kb on + strand, within ABID97_RS03290at 665.546 kb on - strand, within ABID97_RS03290at 665.546 kb on - strand, within ABID97_RS03290at 665.611 kb on + strand, within ABID97_RS03290at 665.612 kb on - strand, within ABID97_RS03290at 666.598 kb on + strand, within ABID97_RS03300at 666.598 kb on + strand, within ABID97_RS03300at 666.599 kb on - strand, within ABID97_RS03300at 666.599 kb on - strand, within ABID97_RS03300at 666.599 kb on - strand, within ABID97_RS03300at 666.599 kb on - strand, within ABID97_RS03300at 666.599 kb on - strand, within ABID97_RS03300at 666.757 kb on + strand, within ABID97_RS03300at 666.757 kb on + strand, within ABID97_RS03300

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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664,894 + -0.3
664,895 - -2.2
665,170 - ABID97_RS03290 0.26 -2.5
665,545 + ABID97_RS03290 0.68 -1.3
665,546 - ABID97_RS03290 0.68 -2.0
665,546 - ABID97_RS03290 0.68 -1.0
665,611 + ABID97_RS03290 0.75 -2.0
665,612 - ABID97_RS03290 0.76 -1.8
666,598 + ABID97_RS03300 0.21 +1.1
666,598 + ABID97_RS03300 0.21 +0.7
666,599 - ABID97_RS03300 0.21 +0.9
666,599 - ABID97_RS03300 0.21 +0.1
666,599 - ABID97_RS03300 0.21 -1.3
666,599 - ABID97_RS03300 0.21 +0.0
666,599 - ABID97_RS03300 0.21 -0.3
666,757 + ABID97_RS03300 0.38 -0.3
666,757 + ABID97_RS03300 0.38 +2.7

Or see this region's nucleotide sequence