Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS01595 and ABID97_RS01600 are separated by 20 nucleotides ABID97_RS01600 and ABID97_RS01605 are separated by 153 nucleotides ABID97_RS01605 and ABID97_RS01610 are separated by 74 nucleotides ABID97_RS01610 and ABID97_RS01615 are separated by 90 nucleotides
ABID97_RS01595: ABID97_RS01595 - tRNA guanosine(34) transglycosylase Tgt, at 314,583 to 315,755
_RS01595
ABID97_RS01600: ABID97_RS01600 - hypothetical protein, at 315,776 to 316,132
_RS01600
ABID97_RS01605: ABID97_RS01605 - SDR family oxidoreductase, at 316,286 to 317,074
_RS01605
ABID97_RS01610: ABID97_RS01610 - DUF3597 domain-containing protein, at 317,149 to 317,535
_RS01610
ABID97_RS01615: ABID97_RS01615 - serine endopeptidase, at 317,626 to 318,735
_RS01615
Position (kb) 316
317
318 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 315.654 kb on + strand at 315.655 kb on - strand at 315.655 kb on - strand at 315.655 kb on - strand at 315.657 kb on + strand at 315.658 kb on - strand at 315.658 kb on - strand at 315.777 kb on + strand at 315.777 kb on + strand at 315.912 kb on + strand, within ABID97_RS01600 at 315.912 kb on + strand, within ABID97_RS01600 at 315.912 kb on + strand, within ABID97_RS01600 at 315.912 kb on + strand, within ABID97_RS01600 at 316.172 kb on + strand at 316.211 kb on + strand at 316.212 kb on - strand at 316.242 kb on - strand at 316.273 kb on + strand at 316.273 kb on + strand at 316.274 kb on - strand at 316.274 kb on - strand at 316.791 kb on - strand, within ABID97_RS01605 at 316.791 kb on - strand, within ABID97_RS01605 at 316.791 kb on - strand, within ABID97_RS01605 at 317.258 kb on + strand, within ABID97_RS01610 at 317.259 kb on - strand, within ABID97_RS01610 at 317.259 kb on - strand, within ABID97_RS01610 at 317.558 kb on + strand at 317.559 kb on - strand at 317.559 kb on - strand at 317.603 kb on + strand at 317.603 kb on + strand at 317.603 kb on + strand at 317.603 kb on + strand at 317.603 kb on + strand at 317.604 kb on - strand at 317.892 kb on - strand, within ABID97_RS01615 at 317.892 kb on - strand, within ABID97_RS01615 at 317.892 kb on - strand, within ABID97_RS01615 at 317.911 kb on + strand, within ABID97_RS01615 at 317.978 kb on + strand, within ABID97_RS01615 at 318.017 kb on + strand, within ABID97_RS01615 at 318.018 kb on - strand, within ABID97_RS01615
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 315,654 + -0.6 315,655 - +0.6 315,655 - -1.5 315,655 - -0.8 315,657 + -0.8 315,658 - -0.7 315,658 - +0.9 315,777 + +0.0 315,777 + +0.6 315,912 + ABID97_RS01600 0.38 -0.0 315,912 + ABID97_RS01600 0.38 +1.1 315,912 + ABID97_RS01600 0.38 +0.5 315,912 + ABID97_RS01600 0.38 -0.0 316,172 + +0.3 316,211 + +0.1 316,212 - +0.1 316,242 - -0.0 316,273 + -0.0 316,273 + +0.6 316,274 - -0.1 316,274 - +0.7 316,791 - ABID97_RS01605 0.64 -3.2 316,791 - ABID97_RS01605 0.64 -3.9 316,791 - ABID97_RS01605 0.64 -5.1 317,258 + ABID97_RS01610 0.28 -0.2 317,259 - ABID97_RS01610 0.28 -0.1 317,259 - ABID97_RS01610 0.28 +0.2 317,558 + +0.7 317,559 - +0.2 317,559 - +0.1 317,603 + +0.3 317,603 + -0.1 317,603 + -0.4 317,603 + +0.4 317,603 + +0.1 317,604 - -0.1 317,892 - ABID97_RS01615 0.24 +1.2 317,892 - ABID97_RS01615 0.24 -0.0 317,892 - ABID97_RS01615 0.24 -0.1 317,911 + ABID97_RS01615 0.26 -0.5 317,978 + ABID97_RS01615 0.32 +0.8 318,017 + ABID97_RS01615 0.35 +0.2 318,018 - ABID97_RS01615 0.35 -0.0
Or see this region's nucleotide sequence