Strain Fitness in Variovorax sp. OAS795 around ABID97_RS01170

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS01160 and ABID97_RS01165 are separated by 40 nucleotidesABID97_RS01165 and ABID97_RS01170 are separated by 1 nucleotidesABID97_RS01170 and ABID97_RS01175 are separated by 9 nucleotides ABID97_RS01160: ABID97_RS01160 - ROK family transcriptional regulator, at 238,523 to 239,683 _RS01160 ABID97_RS01165: ABID97_RS01165 - ATP-binding cassette domain-containing protein, at 239,724 to 240,500 _RS01165 ABID97_RS01170: ABID97_RS01170 - ABC transporter permease, at 240,502 to 241,692 _RS01170 ABID97_RS01175: ABID97_RS01175 - D-xylose ABC transporter substrate-binding protein, at 241,702 to 242,724 _RS01175 Position (kb) 240 241 242Strain fitness (log2 ratio) -3 -2 -1 0 1at 239.879 kb on + strand, within ABID97_RS01165at 240.229 kb on + strand, within ABID97_RS01165at 240.230 kb on - strand, within ABID97_RS01165at 240.230 kb on - strand, within ABID97_RS01165at 240.323 kb on - strand, within ABID97_RS01165at 240.719 kb on + strand, within ABID97_RS01170at 240.719 kb on + strand, within ABID97_RS01170at 240.719 kb on + strand, within ABID97_RS01170at 240.719 kb on + strand, within ABID97_RS01170at 240.720 kb on - strand, within ABID97_RS01170at 240.720 kb on - strand, within ABID97_RS01170at 240.720 kb on - strand, within ABID97_RS01170at 240.720 kb on - strand, within ABID97_RS01170at 240.720 kb on - strand, within ABID97_RS01170at 240.846 kb on + strandat 241.349 kb on + strand, within ABID97_RS01170at 241.350 kb on - strand, within ABID97_RS01170at 241.350 kb on - strand, within ABID97_RS01170at 241.427 kb on + strand, within ABID97_RS01170at 241.553 kb on + strand, within ABID97_RS01170at 241.704 kb on - strandat 242.175 kb on - strand, within ABID97_RS01175at 242.291 kb on + strand, within ABID97_RS01175at 242.291 kb on + strand, within ABID97_RS01175at 242.291 kb on + strand, within ABID97_RS01175at 242.292 kb on - strand, within ABID97_RS01175at 242.292 kb on - strand, within ABID97_RS01175at 242.292 kb on - strand, within ABID97_RS01175at 242.367 kb on - strand, within ABID97_RS01175at 242.367 kb on - strand, within ABID97_RS01175at 242.561 kb on + strand, within ABID97_RS01175

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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239,879 + ABID97_RS01165 0.20 -2.3
240,229 + ABID97_RS01165 0.65 -1.5
240,230 - ABID97_RS01165 0.65 -2.1
240,230 - ABID97_RS01165 0.65 -2.0
240,323 - ABID97_RS01165 0.77 -1.9
240,719 + ABID97_RS01170 0.18 -1.9
240,719 + ABID97_RS01170 0.18 -1.6
240,719 + ABID97_RS01170 0.18 -3.6
240,719 + ABID97_RS01170 0.18 -1.4
240,720 - ABID97_RS01170 0.18 -2.3
240,720 - ABID97_RS01170 0.18 -2.2
240,720 - ABID97_RS01170 0.18 +1.1
240,720 - ABID97_RS01170 0.18 -2.6
240,720 - ABID97_RS01170 0.18 -2.1
240,846 + +1.6
241,349 + ABID97_RS01170 0.71 -2.1
241,350 - ABID97_RS01170 0.71 -2.8
241,350 - ABID97_RS01170 0.71 -2.0
241,427 + ABID97_RS01170 0.78 -1.5
241,553 + ABID97_RS01170 0.88 -1.5
241,704 - -2.5
242,175 - ABID97_RS01175 0.46 -2.2
242,291 + ABID97_RS01175 0.58 -2.4
242,291 + ABID97_RS01175 0.58 -2.3
242,291 + ABID97_RS01175 0.58 -1.0
242,292 - ABID97_RS01175 0.58 -0.9
242,292 - ABID97_RS01175 0.58 -0.2
242,292 - ABID97_RS01175 0.58 -1.9
242,367 - ABID97_RS01175 0.65 -2.0
242,367 - ABID97_RS01175 0.65 +0.1
242,561 + ABID97_RS01175 0.84 -2.7

Or see this region's nucleotide sequence