Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS01160 and ABID97_RS01165 are separated by 40 nucleotides ABID97_RS01165 and ABID97_RS01170 are separated by 1 nucleotides
ABID97_RS01160: ABID97_RS01160 - ROK family transcriptional regulator, at 238,523 to 239,683
_RS01160
ABID97_RS01165: ABID97_RS01165 - ATP-binding cassette domain-containing protein, at 239,724 to 240,500
_RS01165
ABID97_RS01170: ABID97_RS01170 - ABC transporter permease, at 240,502 to 241,692
_RS01170
Position (kb) 239
240
241 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 239.071 kb on - strand, within ABID97_RS01160 at 239.879 kb on + strand, within ABID97_RS01165 at 240.229 kb on + strand, within ABID97_RS01165 at 240.230 kb on - strand, within ABID97_RS01165 at 240.230 kb on - strand, within ABID97_RS01165 at 240.323 kb on - strand, within ABID97_RS01165 at 240.719 kb on + strand, within ABID97_RS01170 at 240.719 kb on + strand, within ABID97_RS01170 at 240.719 kb on + strand, within ABID97_RS01170 at 240.719 kb on + strand, within ABID97_RS01170 at 240.720 kb on - strand, within ABID97_RS01170 at 240.720 kb on - strand, within ABID97_RS01170 at 240.720 kb on - strand, within ABID97_RS01170 at 240.720 kb on - strand, within ABID97_RS01170 at 240.720 kb on - strand, within ABID97_RS01170 at 240.846 kb on + strand at 241.349 kb on + strand, within ABID97_RS01170 at 241.350 kb on - strand, within ABID97_RS01170 at 241.350 kb on - strand, within ABID97_RS01170 at 241.427 kb on + strand, within ABID97_RS01170
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 239,071 - ABID97_RS01160 0.47 -0.1 239,879 + ABID97_RS01165 0.20 -2.3 240,229 + ABID97_RS01165 0.65 -1.5 240,230 - ABID97_RS01165 0.65 -2.1 240,230 - ABID97_RS01165 0.65 -2.0 240,323 - ABID97_RS01165 0.77 -1.9 240,719 + ABID97_RS01170 0.18 -1.9 240,719 + ABID97_RS01170 0.18 -1.6 240,719 + ABID97_RS01170 0.18 -3.6 240,719 + ABID97_RS01170 0.18 -1.4 240,720 - ABID97_RS01170 0.18 -2.3 240,720 - ABID97_RS01170 0.18 -2.2 240,720 - ABID97_RS01170 0.18 +1.1 240,720 - ABID97_RS01170 0.18 -2.6 240,720 - ABID97_RS01170 0.18 -2.1 240,846 + +1.6 241,349 + ABID97_RS01170 0.71 -2.1 241,350 - ABID97_RS01170 0.71 -2.8 241,350 - ABID97_RS01170 0.71 -2.0 241,427 + ABID97_RS01170 0.78 -1.5
Or see this region's nucleotide sequence