Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS00535 and ABID97_RS00540 are separated by 106 nucleotides ABID97_RS00540 and ABID97_RS00545 overlap by 4 nucleotides ABID97_RS00545 and ABID97_RS00550 are separated by 109 nucleotides
ABID97_RS00535: ABID97_RS00535 - NADP-dependent oxidoreductase, at 115,296 to 116,339
_RS00535
ABID97_RS00540: ABID97_RS00540 - HAMP domain-containing sensor histidine kinase, at 116,446 to 117,840
_RS00540
ABID97_RS00545: ABID97_RS00545 - response regulator transcription factor, at 117,837 to 118,538
_RS00545
ABID97_RS00550: ABID97_RS00550 - DUF4260 domain-containing protein, at 118,648 to 119,028
_RS00550
Position (kb) 116
117
118 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 115.522 kb on + strand, within ABID97_RS00535 at 115.522 kb on + strand, within ABID97_RS00535 at 115.522 kb on + strand, within ABID97_RS00535 at 115.564 kb on + strand, within ABID97_RS00535 at 115.565 kb on - strand, within ABID97_RS00535 at 115.565 kb on - strand, within ABID97_RS00535 at 115.657 kb on + strand, within ABID97_RS00535 at 115.657 kb on + strand, within ABID97_RS00535 at 115.657 kb on + strand, within ABID97_RS00535 at 115.657 kb on + strand, within ABID97_RS00535 at 115.723 kb on + strand, within ABID97_RS00535 at 115.723 kb on + strand, within ABID97_RS00535 at 115.723 kb on + strand, within ABID97_RS00535 at 115.724 kb on - strand, within ABID97_RS00535 at 115.724 kb on - strand, within ABID97_RS00535 at 115.916 kb on - strand, within ABID97_RS00535 at 115.916 kb on - strand, within ABID97_RS00535 at 116.029 kb on + strand, within ABID97_RS00535 at 116.029 kb on + strand, within ABID97_RS00535 at 116.029 kb on + strand, within ABID97_RS00535 at 116.029 kb on + strand, within ABID97_RS00535 at 116.029 kb on + strand, within ABID97_RS00535 at 116.030 kb on - strand, within ABID97_RS00535 at 116.030 kb on - strand, within ABID97_RS00535 at 116.030 kb on - strand, within ABID97_RS00535 at 116.030 kb on - strand, within ABID97_RS00535 at 116.030 kb on - strand, within ABID97_RS00535 at 116.030 kb on - strand, within ABID97_RS00535 at 116.030 kb on - strand, within ABID97_RS00535 at 116.030 kb on - strand, within ABID97_RS00535 at 116.030 kb on - strand, within ABID97_RS00535 at 116.030 kb on - strand, within ABID97_RS00535 at 116.030 kb on - strand, within ABID97_RS00535 at 116.054 kb on - strand, within ABID97_RS00535 at 116.054 kb on - strand, within ABID97_RS00535 at 116.054 kb on - strand, within ABID97_RS00535 at 116.074 kb on - strand, within ABID97_RS00535 at 116.074 kb on - strand, within ABID97_RS00535 at 116.074 kb on - strand, within ABID97_RS00535 at 116.152 kb on + strand, within ABID97_RS00535 at 116.152 kb on + strand, within ABID97_RS00535 at 116.152 kb on + strand, within ABID97_RS00535 at 116.152 kb on + strand, within ABID97_RS00535 at 116.153 kb on - strand, within ABID97_RS00535 at 116.153 kb on - strand, within ABID97_RS00535 at 116.153 kb on - strand, within ABID97_RS00535 at 116.153 kb on - strand, within ABID97_RS00535 at 116.153 kb on - strand, within ABID97_RS00535 at 116.153 kb on - strand, within ABID97_RS00535 at 116.447 kb on + strand at 116.447 kb on + strand at 116.447 kb on + strand at 116.447 kb on + strand at 116.447 kb on + strand at 116.447 kb on + strand at 116.448 kb on - strand at 116.448 kb on - strand at 116.448 kb on - strand at 116.448 kb on - strand at 116.448 kb on - strand at 116.534 kb on + strand at 116.534 kb on + strand at 116.534 kb on + strand at 116.534 kb on + strand at 116.534 kb on + strand at 116.534 kb on + strand at 116.534 kb on + strand at 116.534 kb on + strand at 116.535 kb on - strand at 116.535 kb on - strand at 116.535 kb on - strand at 116.535 kb on - strand at 116.535 kb on - strand at 116.535 kb on - strand at 116.535 kb on - strand at 116.535 kb on - strand at 116.535 kb on - strand at 116.535 kb on - strand at 116.588 kb on + strand, within ABID97_RS00540 at 116.589 kb on - strand, within ABID97_RS00540 at 116.589 kb on - strand, within ABID97_RS00540 at 116.648 kb on - strand, within ABID97_RS00540 at 116.648 kb on - strand, within ABID97_RS00540 at 116.778 kb on + strand, within ABID97_RS00540 at 116.778 kb on + strand, within ABID97_RS00540 at 116.778 kb on + strand, within ABID97_RS00540 at 117.260 kb on + strand, within ABID97_RS00540 at 117.260 kb on + strand, within ABID97_RS00540 at 117.260 kb on + strand, within ABID97_RS00540 at 117.261 kb on - strand, within ABID97_RS00540 at 117.266 kb on + strand, within ABID97_RS00540 at 117.267 kb on - strand, within ABID97_RS00540 at 117.267 kb on - strand, within ABID97_RS00540 at 117.584 kb on + strand, within ABID97_RS00540 at 117.585 kb on - strand, within ABID97_RS00540 at 117.585 kb on - strand, within ABID97_RS00540 at 117.585 kb on - strand, within ABID97_RS00540 at 117.871 kb on + strand at 117.958 kb on + strand, within ABID97_RS00545 at 117.958 kb on + strand, within ABID97_RS00545 at 117.958 kb on + strand, within ABID97_RS00545 at 117.959 kb on - strand, within ABID97_RS00545 at 117.959 kb on - strand, within ABID97_RS00545 at 118.246 kb on + strand, within ABID97_RS00545 at 118.246 kb on + strand, within ABID97_RS00545 at 118.246 kb on + strand, within ABID97_RS00545 at 118.246 kb on + strand, within ABID97_RS00545 at 118.246 kb on + strand, within ABID97_RS00545 at 118.246 kb on + strand, within ABID97_RS00545 at 118.247 kb on - strand, within ABID97_RS00545 at 118.247 kb on - strand, within ABID97_RS00545 at 118.247 kb on - strand, within ABID97_RS00545 at 118.247 kb on - strand, within ABID97_RS00545 at 118.247 kb on - strand, within ABID97_RS00545 at 118.480 kb on + strand at 118.480 kb on + strand at 118.480 kb on + strand at 118.480 kb on + strand at 118.481 kb on - strand at 118.481 kb on - strand at 118.481 kb on - strand at 118.481 kb on - strand at 118.706 kb on + strand, within ABID97_RS00550 at 118.706 kb on + strand, within ABID97_RS00550 at 118.707 kb on - strand, within ABID97_RS00550 at 118.829 kb on + strand, within ABID97_RS00550
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 115,522 + ABID97_RS00535 0.22 +0.7 115,522 + ABID97_RS00535 0.22 -0.6 115,522 + ABID97_RS00535 0.22 +0.6 115,564 + ABID97_RS00535 0.26 -0.3 115,565 - ABID97_RS00535 0.26 -0.1 115,565 - ABID97_RS00535 0.26 -0.2 115,657 + ABID97_RS00535 0.35 -0.2 115,657 + ABID97_RS00535 0.35 -0.1 115,657 + ABID97_RS00535 0.35 -1.3 115,657 + ABID97_RS00535 0.35 -0.8 115,723 + ABID97_RS00535 0.41 +0.6 115,723 + ABID97_RS00535 0.41 -0.0 115,723 + ABID97_RS00535 0.41 +0.1 115,724 - ABID97_RS00535 0.41 -0.3 115,724 - ABID97_RS00535 0.41 -0.5 115,916 - ABID97_RS00535 0.59 -0.2 115,916 - ABID97_RS00535 0.59 -3.0 116,029 + ABID97_RS00535 0.70 -0.2 116,029 + ABID97_RS00535 0.70 -0.4 116,029 + ABID97_RS00535 0.70 +0.1 116,029 + ABID97_RS00535 0.70 +0.6 116,029 + ABID97_RS00535 0.70 -0.7 116,030 - ABID97_RS00535 0.70 -0.5 116,030 - ABID97_RS00535 0.70 -0.0 116,030 - ABID97_RS00535 0.70 +0.9 116,030 - ABID97_RS00535 0.70 -0.1 116,030 - ABID97_RS00535 0.70 -0.2 116,030 - ABID97_RS00535 0.70 +0.4 116,030 - ABID97_RS00535 0.70 +0.1 116,030 - ABID97_RS00535 0.70 -0.3 116,030 - ABID97_RS00535 0.70 -0.1 116,030 - ABID97_RS00535 0.70 -0.9 116,030 - ABID97_RS00535 0.70 -0.1 116,054 - ABID97_RS00535 0.73 -0.1 116,054 - ABID97_RS00535 0.73 -0.4 116,054 - ABID97_RS00535 0.73 -0.5 116,074 - ABID97_RS00535 0.75 -0.6 116,074 - ABID97_RS00535 0.75 -0.1 116,074 - ABID97_RS00535 0.75 -0.3 116,152 + ABID97_RS00535 0.82 -0.1 116,152 + ABID97_RS00535 0.82 -0.1 116,152 + ABID97_RS00535 0.82 -0.1 116,152 + ABID97_RS00535 0.82 -0.4 116,153 - ABID97_RS00535 0.82 -0.9 116,153 - ABID97_RS00535 0.82 -0.5 116,153 - ABID97_RS00535 0.82 +0.1 116,153 - ABID97_RS00535 0.82 +0.3 116,153 - ABID97_RS00535 0.82 -1.1 116,153 - ABID97_RS00535 0.82 -0.0 116,447 + +0.2 116,447 + +0.6 116,447 + -0.1 116,447 + -0.3 116,447 + +0.2 116,447 + -0.2 116,448 - +0.4 116,448 - +0.1 116,448 - -0.0 116,448 - +1.1 116,448 - +0.3 116,534 + -0.7 116,534 + -1.0 116,534 + -0.9 116,534 + -0.9 116,534 + -1.0 116,534 + -0.8 116,534 + -1.0 116,534 + -0.4 116,535 - -0.8 116,535 - -1.2 116,535 - -1.4 116,535 - -0.5 116,535 - -0.3 116,535 - -0.9 116,535 - -1.4 116,535 - -0.1 116,535 - -2.0 116,535 - -0.3 116,588 + ABID97_RS00540 0.10 -2.0 116,589 - ABID97_RS00540 0.10 -1.4 116,589 - ABID97_RS00540 0.10 -1.8 116,648 - ABID97_RS00540 0.14 +0.1 116,648 - ABID97_RS00540 0.14 -0.7 116,778 + ABID97_RS00540 0.24 -1.0 116,778 + ABID97_RS00540 0.24 -1.0 116,778 + ABID97_RS00540 0.24 -0.4 117,260 + ABID97_RS00540 0.58 +0.7 117,260 + ABID97_RS00540 0.58 +0.2 117,260 + ABID97_RS00540 0.58 -1.1 117,261 - ABID97_RS00540 0.58 -0.3 117,266 + ABID97_RS00540 0.59 -1.3 117,267 - ABID97_RS00540 0.59 -1.1 117,267 - ABID97_RS00540 0.59 -0.9 117,584 + ABID97_RS00540 0.82 -1.4 117,585 - ABID97_RS00540 0.82 -2.2 117,585 - ABID97_RS00540 0.82 -1.8 117,585 - ABID97_RS00540 0.82 -1.5 117,871 + +0.3 117,958 + ABID97_RS00545 0.17 +0.3 117,958 + ABID97_RS00545 0.17 -0.7 117,958 + ABID97_RS00545 0.17 -0.4 117,959 - ABID97_RS00545 0.17 +0.2 117,959 - ABID97_RS00545 0.17 -0.3 118,246 + ABID97_RS00545 0.58 +0.2 118,246 + ABID97_RS00545 0.58 -0.2 118,246 + ABID97_RS00545 0.58 -0.1 118,246 + ABID97_RS00545 0.58 -0.1 118,246 + ABID97_RS00545 0.58 -0.2 118,246 + ABID97_RS00545 0.58 +2.2 118,247 - ABID97_RS00545 0.58 -0.0 118,247 - ABID97_RS00545 0.58 +0.1 118,247 - ABID97_RS00545 0.58 -0.3 118,247 - ABID97_RS00545 0.58 +0.7 118,247 - ABID97_RS00545 0.58 +0.1 118,480 + -1.2 118,480 + -0.2 118,480 + -0.3 118,480 + -0.0 118,481 - -0.0 118,481 - -0.1 118,481 - -0.1 118,481 - +0.2 118,706 + ABID97_RS00550 0.15 +0.2 118,706 + ABID97_RS00550 0.15 +0.5 118,707 - ABID97_RS00550 0.15 -0.4 118,829 + ABID97_RS00550 0.48 -0.0
Or see this region's nucleotide sequence