Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS00060 and ABID97_RS00065 are separated by 13 nucleotides ABID97_RS00065 and ABID97_RS00070 are separated by 138 nucleotides ABID97_RS00070 and ABID97_RS00075 are separated by 134 nucleotides
ABID97_RS00060: ABID97_RS00060 - LuxR C-terminal-related transcriptional regulator, at 13,722 to 14,483
_RS00060
ABID97_RS00065: ABID97_RS00065 - M48 family metalloprotease, at 14,497 to 15,261
_RS00065
ABID97_RS00070: ABID97_RS00070 - fumarylacetoacetate hydrolase family protein, at 15,400 to 16,473
_RS00070
ABID97_RS00075: ABID97_RS00075 - DUF3108 domain-containing protein, at 16,608 to 17,813
_RS00075
Position (kb) 15
16
17 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 14.434 kb on + strand at 14.434 kb on + strand at 14.434 kb on + strand at 14.434 kb on + strand at 14.435 kb on - strand at 14.435 kb on - strand at 14.435 kb on - strand at 14.438 kb on + strand at 14.438 kb on + strand at 14.438 kb on + strand at 14.438 kb on + strand at 14.438 kb on + strand at 14.439 kb on - strand at 14.439 kb on - strand at 14.439 kb on - strand at 14.439 kb on - strand at 14.481 kb on + strand at 14.482 kb on - strand at 14.669 kb on + strand, within ABID97_RS00065 at 14.670 kb on - strand, within ABID97_RS00065 at 14.670 kb on - strand, within ABID97_RS00065 at 14.670 kb on - strand, within ABID97_RS00065 at 14.810 kb on + strand, within ABID97_RS00065 at 14.811 kb on - strand, within ABID97_RS00065 at 14.918 kb on + strand, within ABID97_RS00065 at 14.918 kb on + strand, within ABID97_RS00065 at 14.919 kb on - strand, within ABID97_RS00065 at 14.919 kb on - strand, within ABID97_RS00065 at 14.972 kb on + strand, within ABID97_RS00065 at 14.972 kb on + strand, within ABID97_RS00065 at 14.972 kb on + strand, within ABID97_RS00065 at 14.972 kb on + strand, within ABID97_RS00065 at 14.972 kb on + strand, within ABID97_RS00065 at 14.973 kb on - strand, within ABID97_RS00065 at 14.973 kb on - strand, within ABID97_RS00065 at 14.973 kb on - strand, within ABID97_RS00065 at 14.973 kb on - strand, within ABID97_RS00065 at 14.973 kb on - strand, within ABID97_RS00065 at 14.981 kb on + strand, within ABID97_RS00065 at 14.981 kb on + strand, within ABID97_RS00065 at 14.981 kb on + strand, within ABID97_RS00065 at 14.981 kb on + strand, within ABID97_RS00065 at 14.982 kb on - strand, within ABID97_RS00065 at 14.982 kb on - strand, within ABID97_RS00065 at 14.982 kb on - strand, within ABID97_RS00065 at 14.982 kb on - strand, within ABID97_RS00065 at 14.982 kb on - strand, within ABID97_RS00065 at 14.982 kb on - strand, within ABID97_RS00065 at 15.047 kb on + strand, within ABID97_RS00065 at 15.047 kb on + strand, within ABID97_RS00065 at 15.093 kb on + strand, within ABID97_RS00065 at 15.094 kb on - strand, within ABID97_RS00065 at 15.149 kb on + strand, within ABID97_RS00065 at 15.150 kb on - strand, within ABID97_RS00065 at 15.254 kb on + strand at 15.254 kb on + strand at 15.254 kb on + strand at 15.280 kb on + strand at 15.280 kb on + strand at 15.281 kb on - strand at 15.283 kb on + strand at 15.283 kb on + strand at 15.284 kb on - strand at 15.284 kb on - strand at 15.284 kb on - strand at 15.284 kb on - strand at 15.284 kb on - strand at 15.362 kb on + strand at 15.362 kb on + strand at 15.362 kb on + strand at 15.362 kb on + strand at 15.363 kb on - strand at 15.363 kb on - strand at 15.363 kb on - strand at 15.627 kb on - strand, within ABID97_RS00070 at 15.627 kb on - strand, within ABID97_RS00070 at 16.133 kb on + strand, within ABID97_RS00070 at 16.133 kb on + strand, within ABID97_RS00070 at 16.133 kb on + strand, within ABID97_RS00070 at 16.134 kb on - strand, within ABID97_RS00070 at 16.134 kb on - strand, within ABID97_RS00070 at 16.134 kb on - strand, within ABID97_RS00070 at 16.134 kb on - strand, within ABID97_RS00070 at 16.134 kb on - strand, within ABID97_RS00070 at 16.134 kb on - strand, within ABID97_RS00070 at 16.134 kb on - strand, within ABID97_RS00070 at 16.134 kb on - strand, within ABID97_RS00070 at 16.134 kb on - strand, within ABID97_RS00070 at 16.151 kb on + strand, within ABID97_RS00070 at 16.151 kb on + strand, within ABID97_RS00070 at 16.151 kb on + strand, within ABID97_RS00070 at 16.152 kb on - strand, within ABID97_RS00070 at 16.212 kb on - strand, within ABID97_RS00070 at 16.316 kb on + strand, within ABID97_RS00070 at 16.316 kb on + strand, within ABID97_RS00070 at 16.317 kb on - strand, within ABID97_RS00070 at 16.317 kb on - strand, within ABID97_RS00070 at 16.395 kb on - strand at 16.533 kb on - strand at 16.533 kb on - strand at 16.557 kb on + strand at 16.558 kb on - strand at 16.558 kb on - strand at 17.271 kb on + strand, within ABID97_RS00075 at 17.271 kb on + strand, within ABID97_RS00075 at 17.272 kb on - strand, within ABID97_RS00075 at 17.272 kb on - strand, within ABID97_RS00075 at 17.435 kb on + strand, within ABID97_RS00075
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 14,434 + -0.1 14,434 + +0.2 14,434 + +0.0 14,434 + -0.8 14,435 - -0.5 14,435 - -0.9 14,435 - -0.8 14,438 + +0.0 14,438 + -0.7 14,438 + +0.5 14,438 + +0.9 14,438 + -0.5 14,439 - +0.2 14,439 - -0.5 14,439 - +0.5 14,439 - -0.0 14,481 + -0.3 14,482 - -0.4 14,669 + ABID97_RS00065 0.22 -0.4 14,670 - ABID97_RS00065 0.23 -0.5 14,670 - ABID97_RS00065 0.23 -0.4 14,670 - ABID97_RS00065 0.23 +1.7 14,810 + ABID97_RS00065 0.41 -0.8 14,811 - ABID97_RS00065 0.41 -0.0 14,918 + ABID97_RS00065 0.55 -0.8 14,918 + ABID97_RS00065 0.55 -1.0 14,919 - ABID97_RS00065 0.55 -1.8 14,919 - ABID97_RS00065 0.55 +0.3 14,972 + ABID97_RS00065 0.62 -0.3 14,972 + ABID97_RS00065 0.62 +0.2 14,972 + ABID97_RS00065 0.62 +0.5 14,972 + ABID97_RS00065 0.62 -0.4 14,972 + ABID97_RS00065 0.62 -0.7 14,973 - ABID97_RS00065 0.62 -0.1 14,973 - ABID97_RS00065 0.62 -0.2 14,973 - ABID97_RS00065 0.62 -1.3 14,973 - ABID97_RS00065 0.62 -0.1 14,973 - ABID97_RS00065 0.62 +0.0 14,981 + ABID97_RS00065 0.63 -2.2 14,981 + ABID97_RS00065 0.63 -1.1 14,981 + ABID97_RS00065 0.63 -0.4 14,981 + ABID97_RS00065 0.63 -0.6 14,982 - ABID97_RS00065 0.63 +0.5 14,982 - ABID97_RS00065 0.63 -0.4 14,982 - ABID97_RS00065 0.63 +1.0 14,982 - ABID97_RS00065 0.63 -1.0 14,982 - ABID97_RS00065 0.63 +0.1 14,982 - ABID97_RS00065 0.63 -0.3 15,047 + ABID97_RS00065 0.72 +0.3 15,047 + ABID97_RS00065 0.72 +0.9 15,093 + ABID97_RS00065 0.78 -0.7 15,094 - ABID97_RS00065 0.78 -0.5 15,149 + ABID97_RS00065 0.85 +0.1 15,150 - ABID97_RS00065 0.85 -0.1 15,254 + -0.2 15,254 + -0.5 15,254 + +0.1 15,280 + -0.2 15,280 + -0.3 15,281 - -1.6 15,283 + -0.4 15,283 + -0.5 15,284 - -0.2 15,284 - -0.8 15,284 - -0.5 15,284 - -0.8 15,284 - -0.6 15,362 + -0.9 15,362 + -0.5 15,362 + -0.5 15,362 + -0.8 15,363 - +0.1 15,363 - +2.2 15,363 - -0.0 15,627 - ABID97_RS00070 0.21 -0.7 15,627 - ABID97_RS00070 0.21 -0.4 16,133 + ABID97_RS00070 0.68 -0.4 16,133 + ABID97_RS00070 0.68 -1.3 16,133 + ABID97_RS00070 0.68 -1.1 16,134 - ABID97_RS00070 0.68 -1.4 16,134 - ABID97_RS00070 0.68 -1.3 16,134 - ABID97_RS00070 0.68 -0.6 16,134 - ABID97_RS00070 0.68 -1.5 16,134 - ABID97_RS00070 0.68 -0.9 16,134 - ABID97_RS00070 0.68 -2.1 16,134 - ABID97_RS00070 0.68 -1.3 16,134 - ABID97_RS00070 0.68 -0.4 16,134 - ABID97_RS00070 0.68 -2.1 16,151 + ABID97_RS00070 0.70 -1.4 16,151 + ABID97_RS00070 0.70 -2.2 16,151 + ABID97_RS00070 0.70 -2.9 16,152 - ABID97_RS00070 0.70 -0.5 16,212 - ABID97_RS00070 0.76 -1.7 16,316 + ABID97_RS00070 0.85 -0.2 16,316 + ABID97_RS00070 0.85 -1.4 16,317 - ABID97_RS00070 0.85 -1.6 16,317 - ABID97_RS00070 0.85 -1.2 16,395 - -0.9 16,533 - +0.1 16,533 - +0.2 16,557 + +0.8 16,558 - +0.8 16,558 - -0.1 17,271 + ABID97_RS00075 0.55 -0.3 17,271 + ABID97_RS00075 0.55 +0.0 17,272 - ABID97_RS00075 0.55 +0.0 17,272 - ABID97_RS00075 0.55 -0.4 17,435 + ABID97_RS00075 0.69 +0.2
Or see this region's nucleotide sequence