Strain Fitness in Escherichia coli BW25113 around b1702

Experiment: L-Malic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntfadK and pps are separated by 56 nucleotidespps and ydiA are separated by 332 nucleotides b1701: fadK - short chain acyl-CoA synthetase, anaerobic (RefSeq), at 1,781,055 to 1,782,701 fadK b1702: pps - phosphoenolpyruvate synthase (NCBI), at 1,782,758 to 1,785,136 pps b1703: ydiA - hypothetical protein (NCBI), at 1,785,469 to 1,786,302 ydiA Position (kb) 1782 1783 1784 1785 1786Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1781.882 kb on + strand, within fadKat 1781.898 kb on - strand, within fadKat 1782.138 kb on + strand, within fadKat 1782.237 kb on + strand, within fadKat 1782.273 kb on - strand, within fadKat 1782.275 kb on + strand, within fadKat 1782.275 kb on + strand, within fadKat 1782.284 kb on + strand, within fadKat 1782.308 kb on + strand, within fadKat 1782.308 kb on + strand, within fadKat 1782.313 kb on + strand, within fadKat 1782.317 kb on + strand, within fadKat 1782.409 kb on + strand, within fadKat 1782.409 kb on + strand, within fadKat 1782.445 kb on + strand, within fadKat 1782.448 kb on - strand, within fadKat 1782.485 kb on + strand, within fadKat 1782.485 kb on + strand, within fadKat 1782.485 kb on + strand, within fadKat 1782.509 kb on + strand, within fadKat 1782.510 kb on + strand, within fadKat 1782.510 kb on + strand, within fadKat 1782.532 kb on + strand, within fadKat 1782.579 kb on + strandat 1782.660 kb on + strandat 1782.701 kb on + strandat 1782.726 kb on + strandat 1782.728 kb on - strandat 1782.733 kb on - strandat 1782.777 kb on - strandat 1782.777 kb on - strandat 1782.788 kb on + strandat 1782.796 kb on - strandat 1782.809 kb on - strandat 1782.837 kb on + strandat 1782.838 kb on - strandat 1782.839 kb on + strandat 1782.839 kb on + strandat 1783.228 kb on - strand, within ppsat 1783.228 kb on - strand, within ppsat 1783.228 kb on - strand, within ppsat 1783.342 kb on - strand, within ppsat 1783.681 kb on - strand, within ppsat 1783.681 kb on - strand, within ppsat 1783.852 kb on + strand, within ppsat 1783.852 kb on + strand, within ppsat 1783.992 kb on + strand, within ppsat 1784.093 kb on - strand, within ppsat 1784.142 kb on + strand, within ppsat 1784.212 kb on + strand, within ppsat 1784.322 kb on - strand, within ppsat 1784.324 kb on - strand, within ppsat 1784.418 kb on - strandat 1784.432 kb on - strand, within ppsat 1784.446 kb on - strand, within ppsat 1784.446 kb on - strand, within ppsat 1784.455 kb on - strand, within ppsat 1784.472 kb on - strand, within ppsat 1784.598 kb on + strand, within ppsat 1784.610 kb on + strand, within ppsat 1784.832 kb on + strand, within ppsat 1784.832 kb on + strand, within ppsat 1784.954 kb on + strandat 1785.015 kb on + strandat 1785.056 kb on + strandat 1785.076 kb on + strandat 1785.101 kb on + strandat 1785.101 kb on + strandat 1785.111 kb on + strandat 1785.268 kb on + strandat 1785.268 kb on + strandat 1785.399 kb on - strandat 1785.739 kb on + strand, within ydiAat 1785.765 kb on + strand, within ydiAat 1785.814 kb on - strand, within ydiAat 1785.826 kb on - strand, within ydiAat 1785.827 kb on - strand, within ydiAat 1785.827 kb on - strand, within ydiAat 1785.918 kb on + strand, within ydiAat 1785.918 kb on + strand, within ydiA

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C)
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1,781,882 + fadK b1701 0.50 +0.0
1,781,898 - fadK b1701 0.51 -0.7
1,782,138 + fadK b1701 0.66 +0.6
1,782,237 + fadK b1701 0.72 +0.5
1,782,273 - fadK b1701 0.74 -0.4
1,782,275 + fadK b1701 0.74 -0.2
1,782,275 + fadK b1701 0.74 -0.7
1,782,284 + fadK b1701 0.75 +0.3
1,782,308 + fadK b1701 0.76 -0.1
1,782,308 + fadK b1701 0.76 -3.5
1,782,313 + fadK b1701 0.76 -0.3
1,782,317 + fadK b1701 0.77 -0.3
1,782,409 + fadK b1701 0.82 +0.7
1,782,409 + fadK b1701 0.82 -2.4
1,782,445 + fadK b1701 0.84 -1.2
1,782,448 - fadK b1701 0.85 -0.6
1,782,485 + fadK b1701 0.87 -0.1
1,782,485 + fadK b1701 0.87 +0.8
1,782,485 + fadK b1701 0.87 -0.3
1,782,509 + fadK b1701 0.88 +1.6
1,782,510 + fadK b1701 0.88 +0.8
1,782,510 + fadK b1701 0.88 +1.1
1,782,532 + fadK b1701 0.90 -0.1
1,782,579 + +0.9
1,782,660 + -0.3
1,782,701 + -0.4
1,782,726 + +0.8
1,782,728 - +0.1
1,782,733 - +0.3
1,782,777 - -0.2
1,782,777 - +0.5
1,782,788 + -1.4
1,782,796 - -0.7
1,782,809 - -0.3
1,782,837 + -1.4
1,782,838 - +0.8
1,782,839 + -0.7
1,782,839 + +0.1
1,783,228 - pps b1702 0.20 +0.1
1,783,228 - pps b1702 0.20 -0.5
1,783,228 - pps b1702 0.20 +0.1
1,783,342 - pps b1702 0.25 -1.9
1,783,681 - pps b1702 0.39 +0.1
1,783,681 - pps b1702 0.39 -0.0
1,783,852 + pps b1702 0.46 +0.4
1,783,852 + pps b1702 0.46 +0.4
1,783,992 + pps b1702 0.52 +0.2
1,784,093 - pps b1702 0.56 +1.9
1,784,142 + pps b1702 0.58 +0.0
1,784,212 + pps b1702 0.61 +1.0
1,784,322 - pps b1702 0.66 +0.4
1,784,324 - pps b1702 0.66 +1.7
1,784,418 - +1.5
1,784,432 - pps b1702 0.70 +0.0
1,784,446 - pps b1702 0.71 +0.6
1,784,446 - pps b1702 0.71 +0.9
1,784,455 - pps b1702 0.71 +0.6
1,784,472 - pps b1702 0.72 +0.2
1,784,598 + pps b1702 0.77 +0.6
1,784,610 + pps b1702 0.78 +0.5
1,784,832 + pps b1702 0.87 -0.7
1,784,832 + pps b1702 0.87 -0.9
1,784,954 + +0.1
1,785,015 + -0.3
1,785,056 + -0.0
1,785,076 + -0.3
1,785,101 + +0.3
1,785,101 + -0.5
1,785,111 + +1.1
1,785,268 + +0.7
1,785,268 + -0.8
1,785,399 - +0.5
1,785,739 + ydiA b1703 0.32 -0.4
1,785,765 + ydiA b1703 0.35 +0.1
1,785,814 - ydiA b1703 0.41 -0.3
1,785,826 - ydiA b1703 0.43 +0.2
1,785,827 - ydiA b1703 0.43 -0.5
1,785,827 - ydiA b1703 0.43 -0.4
1,785,918 + ydiA b1703 0.54 +0.9
1,785,918 + ydiA b1703 0.54 +0.5

Or see this region's nucleotide sequence