Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_4236

Experiment: Green bean; epiphytic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Green bean; epiphytic
5,045,822	+		Psyr_4235	0.64	-0.4
5,045,823	-		Psyr_4235	0.65	-0.6
5,045,823	-		Psyr_4235	0.65	-1.7
5,045,823	-		Psyr_4235	0.65	+0.5
5,045,849	+		Psyr_4235	0.66	+0.2
5,045,849	+		Psyr_4235	0.66	-1.6
5,045,849	+		Psyr_4235	0.66	-0.2
5,045,850	-		Psyr_4235	0.66	-1.1
5,045,850	-		Psyr_4235	0.66	+0.5
5,045,850	-		Psyr_4235	0.66	-0.2
5,045,850	-		Psyr_4235	0.66	-1.3
5,045,850	-		Psyr_4235	0.66	-1.7
5,045,850	-		Psyr_4235	0.66	-0.5
5,045,943	-		Psyr_4235	0.72	+0.5
5,045,943	-		Psyr_4235	0.72	-1.0
5,045,943	-		Psyr_4235	0.72	-1.5
5,045,943	-		Psyr_4235	0.72	-0.2
5,046,023	+		Psyr_4235	0.77	-1.7
5,046,023	+		Psyr_4235	0.77	-0.8
5,046,024	-		Psyr_4235	0.77	+0.4
5,046,024	-		Psyr_4235	0.77	-1.3
5,046,024	-		Psyr_4235	0.77	-1.0
5,046,024	-		Psyr_4235	0.77	-1.5
5,046,024	-		Psyr_4235	0.77	-0.0
5,046,024	-		Psyr_4235	0.77	-0.5
5,046,024	-		Psyr_4235	0.77	+0.2
5,046,038	+		Psyr_4235	0.78	+0.5
5,046,038	+		Psyr_4235	0.78	-0.2
5,046,039	-		Psyr_4235	0.78	-0.5
5,046,039	-		Psyr_4235	0.78	-1.2
5,046,039	-		Psyr_4235	0.78	-0.3
5,046,245	+				-0.6
5,046,245	+				-0.4
5,046,245	+				+1.2
5,046,245	+				-0.9
5,046,246	-				+0.2
5,046,246	-				-2.7
5,046,246	-				-0.1
5,046,246	-				-0.4
5,046,246	-				-1.3
5,046,246	-				-0.8
5,046,311	+				-0.0
5,046,312	-				+1.7
5,046,333	+				+0.5
5,046,333	+				+0.3
5,046,334	-				-0.4
5,046,374	+				+0.6
5,046,374	+				+1.2
5,046,374	+				+0.6
5,046,398	+				+0.4
5,046,398	+				+1.2
5,046,446	+				+2.2
5,046,447	-				-0.9
5,046,447	-				-0.4
5,046,447	-				+0.2
5,046,447	-				-0.4
5,046,456	+				+1.4
5,046,456	+				+0.4
5,046,456	+				+0.7
5,046,456	+				+1.4
5,046,457	-				-2.0
5,046,457	-				-1.7
5,046,457	-				-1.6
5,046,457	-				-0.5
5,046,457	-				-0.7
5,046,457	-				-0.3
5,046,502	+				+1.3
5,046,502	+				+1.8
5,046,503	-				-0.2
5,046,503	-				-0.6
5,046,505	+				+1.2
5,046,505	+				+2.0
5,046,506	-				-0.2
5,046,506	-				+0.2
5,046,511	+				+1.3
5,046,512	-				-0.6
5,046,512	-				+0.6
5,046,516	+				+0.5
5,046,516	+				+1.3
5,046,516	+				+1.2
5,046,517	-				-0.2
5,046,517	-				-0.2
5,046,517	-				+1.2
5,046,517	-				+2.7
5,046,517	-				+0.3
5,046,517	-				+0.7
5,046,517	-				-0.6
5,046,523	+				-1.6
5,046,547	+				+1.5
5,046,547	+				+0.8
5,046,547	+				+0.4
5,046,547	+				+1.2
5,046,547	+				+0.2
5,046,547	+				+1.0
5,046,547	+				+1.2
5,046,547	+				+1.2
5,046,547	+				+1.6
5,046,547	+				-0.1
5,046,548	-				-1.4
5,046,548	-				-0.1
5,046,548	-				-1.5
5,046,548	-				-0.1
5,046,548	-				-0.7
5,046,548	-				+0.0
5,046,548	-				+1.7
5,046,548	-				-0.8
5,046,549	+				+0.8
5,046,549	+				+1.4
5,046,550	-				+0.3
5,046,550	-				-0.2
5,046,550	-				+0.2
5,046,551	+				-1.4
5,046,551	+				+0.5
5,046,552	-				-0.0
5,046,552	-				-1.6
5,046,552	-				-0.2
5,046,572	+				+1.5
5,046,572	+				+0.6
5,046,675	+				+2.2
5,046,675	+				+0.3
5,046,675	+				+0.8
5,046,675	+				+2.4
5,046,675	+				+1.3
5,046,675	+				+0.4
5,046,676	-				-0.1
5,046,676	-				+0.3
5,046,676	-				+1.2
5,046,676	-				-0.8
5,046,676	-				-1.7
5,046,676	-				+0.2
5,046,679	+				+1.8
5,046,679	+				+0.4
5,046,679	+				+0.9
5,046,680	-				-2.4
5,046,680	-				+0.6
5,046,680	-				-1.9
5,046,680	-				+0.1
5,046,680	-				-0.8
5,046,680	-				+0.4
5,046,680	-				-1.6
5,046,682	+				+1.4
5,046,683	-				-0.4
5,046,683	-				-0.3
5,046,683	-				+0.0
5,046,683	-				-1.8
5,046,724	+				-1.3
5,046,724	+				-1.5
5,046,725	-				-0.5
5,046,843	-				-1.2
5,046,843	-				-0.4
5,046,881	+		Psyr_4236	0.10	-0.2
5,046,882	-		Psyr_4236	0.10	-1.6
5,046,882	-		Psyr_4236	0.10	-3.2
5,046,882	-		Psyr_4236	0.10	-0.3
5,046,882	-		Psyr_4236	0.10	-1.2
5,046,882	-		Psyr_4236	0.10	-0.8
5,046,913	+		Psyr_4236	0.12	-0.7
5,046,971	+		Psyr_4236	0.16	+0.1
5,047,125	-		Psyr_4236	0.25	-1.2
5,047,205	-		Psyr_4236	0.31	-0.3
5,047,376	+		Psyr_4236	0.41	-0.7
5,047,377	-		Psyr_4236	0.41	+0.1
5,047,583	+		Psyr_4236	0.54	+1.0
5,047,584	-		Psyr_4236	0.54	-1.1
5,047,584	-		Psyr_4236	0.54	+0.1
5,047,592	+		Psyr_4236	0.55	-0.6
5,047,592	+		Psyr_4236	0.55	-0.4
5,047,593	-		Psyr_4236	0.55	-1.2
5,047,593	-		Psyr_4236	0.55	+2.0
5,047,682	+		Psyr_4236	0.60	+0.0
5,047,737	-		Psyr_4236	0.64	-0.7
5,047,824	+		Psyr_4236	0.69	+0.4
5,047,825	-		Psyr_4236	0.69	+1.4
5,047,856	+		Psyr_4236	0.71	-1.2
5,047,857	-		Psyr_4236	0.71	+0.2
5,047,857	-		Psyr_4236	0.71	-2.2
5,047,857	-		Psyr_4236	0.71	-0.2
5,047,937	+		Psyr_4236	0.76	+1.6
5,047,938	-		Psyr_4236	0.77	-0.1
5,047,938	-		Psyr_4236	0.77	-0.3
5,047,952	+		Psyr_4236	0.77	+3.0
5,047,952	+		Psyr_4236	0.77	+0.9
5,047,952	+		Psyr_4236	0.77	+0.3
5,047,953	-		Psyr_4236	0.77	+0.6
5,047,953	-		Psyr_4236	0.77	-0.6
5,047,985	-		Psyr_4236	0.79	-0.0
5,048,045	+		Psyr_4236	0.83	+0.4
5,048,075	+		Psyr_4236	0.85	+0.7
5,048,075	+		Psyr_4236	0.85	-0.8
5,048,075	+		Psyr_4236	0.85	+0.4
5,048,075	+		Psyr_4236	0.85	+0.6
5,048,075	+		Psyr_4236	0.85	+1.6
5,048,075	+		Psyr_4236	0.85	+0.2
5,048,076	-		Psyr_4236	0.85	-0.1
5,048,076	-		Psyr_4236	0.85	-0.1
5,048,076	-		Psyr_4236	0.85	-1.6
5,048,076	-		Psyr_4236	0.85	-2.8
5,048,076	-		Psyr_4236	0.85	-0.8
5,048,076	-		Psyr_4236	0.85	+1.6
5,048,099	+		Psyr_4236	0.87	+0.3
5,048,099	+		Psyr_4236	0.87	+0.8
5,048,100	-		Psyr_4236	0.87	-1.4
5,048,100	-		Psyr_4236	0.87	-0.2
5,048,100	-		Psyr_4236	0.87	+1.2
5,048,100	-		Psyr_4236	0.87	-0.8
5,048,160	-				+1.2
5,048,360	+				+0.4
5,048,374	+				+0.7
5,048,374	+				+1.6
5,048,378	+				+1.2
5,048,378	+				+0.8
5,048,378	+				-0.5
5,048,378	+				+0.3
5,048,379	-				-0.4
5,048,379	-				-1.0
5,048,379	-				+0.2
5,048,379	-				-0.8
5,048,379	-				-2.0
5,048,379	-				-1.8
5,048,379	-				+1.3
5,048,379	-				+2.4
5,048,379	-				-0.2
5,048,379	-				+0.2
5,048,379	-				+0.8
5,048,379	-				-0.2
5,048,379	-				+0.0
5,048,379	-				+0.4
5,048,379	-				-0.8
5,048,380	+				+1.0
5,048,381	-				-0.8
5,048,381	-				-0.0
5,048,439	+				+2.2
5,048,440	-				-0.4
5,048,440	-				-1.5
5,048,479	+				+0.0
5,048,479	+				-2.2
5,048,479	+				-0.6
5,048,480	-				-1.3
5,048,480	-				-0.0
5,048,480	-				-0.8
5,048,480	-				-0.3
5,048,606	-				-1.0
5,048,645	+		Psyr_4237	0.12	+0.1
5,048,645	+		Psyr_4237	0.12	-0.3
5,048,684	+		Psyr_4237	0.15	-2.0
5,048,723	-		Psyr_4237	0.18	-0.5
5,048,753	+		Psyr_4237	0.20	+2.6
5,048,753	+		Psyr_4237	0.20	-0.8
5,048,753	+		Psyr_4237	0.20	-1.6
5,048,754	-		Psyr_4237	0.20	+2.8
5,048,754	-		Psyr_4237	0.20	+0.4
5,048,754	-		Psyr_4237	0.20	+0.4
5,048,754	-		Psyr_4237	0.20	+0.5
5,048,754	-		Psyr_4237	0.20	-1.9
5,048,754	-		Psyr_4237	0.20	-0.3
5,048,765	+		Psyr_4237	0.21	-1.6
5,048,765	+		Psyr_4237	0.21	+0.2
5,048,781	+		Psyr_4237	0.22	-0.2
5,048,781	+		Psyr_4237	0.22	-0.6
5,048,782	-		Psyr_4237	0.22	+0.2
5,048,782	-		Psyr_4237	0.22	-0.0
5,048,782	-		Psyr_4237	0.22	-0.8
5,048,782	-		Psyr_4237	0.22	-2.4
5,048,807	+		Psyr_4237	0.24	+0.5
5,048,807	+		Psyr_4237	0.24	-0.3
5,048,807	+		Psyr_4237	0.24	+0.2
5,048,808	-		Psyr_4237	0.24	-1.2
5,048,863	+		Psyr_4237	0.28	-0.6
5,048,949	+		Psyr_4237	0.34	-0.8
5,049,103	+		Psyr_4237	0.45	+1.2
5,049,103	+		Psyr_4237	0.45	+0.3
5,049,103	+		Psyr_4237	0.45	-0.6
5,049,103	+		Psyr_4237	0.45	-0.6
5,049,104	-		Psyr_4237	0.45	-1.2
5,049,104	-		Psyr_4237	0.45	+0.1
5,049,188	+		Psyr_4237	0.51	-1.5
5,049,188	+		Psyr_4237	0.51	-0.1
5,049,188	+		Psyr_4237	0.51	-0.4
5,049,188	+		Psyr_4237	0.51	+0.2
5,049,188	+		Psyr_4237	0.51	+0.2
5,049,188	+		Psyr_4237	0.51	+2.8
5,049,189	-		Psyr_4237	0.51	+0.4
5,049,189	-		Psyr_4237	0.51	-1.1
5,049,189	-		Psyr_4237	0.51	-1.0
5,049,189	-		Psyr_4237	0.51	+1.6
5,049,189	-		Psyr_4237	0.51	-1.0
5,049,222	-		Psyr_4237	0.53	+1.2
5,049,254	+		Psyr_4237	0.56	-1.7
5,049,254	+		Psyr_4237	0.56	-0.5
5,049,255	-		Psyr_4237	0.56	-0.1
5,049,255	-		Psyr_4237	0.56	-0.4
5,049,258	-		Psyr_4237	0.56	+0.4
5,049,258	-		Psyr_4237	0.56	-1.4
5,049,258	-		Psyr_4237	0.56	-0.4